Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03413 ATGATTCCAGCCTATCGCCACTCAGTATCTTCTGTGATTCCTCTAGATCTTAATGAAGATGAAAACCATGTGAACTTCACTCCAACTCATCATGCCTACTCTTCTTTTTCTTCTCTATCATCTTCAAATCATGTTCCCTTCAACCCTCCAGATCAAGAAGCGGGATCACACTACTGGGAACCAACAAAGCACTTACCAATTCATCAAGAGGCTGAGAAGATTAACCCTACCATGGGATCATGGGATCACTCGGTGGCAGAAAGTGAGCTCAAGGTGACAGTTTGGAAGAAAAAAGAGAGGAGTGAAGATCATGAAGCAGCTGCTGAGGATGGTTCGGTGAAGTGGATGACTTCAAAGATGAGAATGATGCGGAAGATGATGACGATGCCGGATCAAACTGGTGCATATATAGAAGAGAATACTATGCACAAGTTTGAAGATCAGAAACAACCATTGTCGCCGCTTGGAGCTGATAACAGTAGCAGCAACAACTATTCAAACCACAGTAATAACACTGTTAGGGTTTGTGCTGATTGCCACACCACCAAGACCCCTCTGTGGAGGAGTGGACCAAGAGGCCCCAAGTCACTATGCAATGCCTGTGGAATTCGACAAAGGAAGGCGAGACGAGCCATGGCAGCTGCGGCATCGGGAAATGGAAAAGTAATTGTGGAAGCTGAGAAATCTGTGAAGGGAAACAAGTTGCAGAAGAAAGAGAAGAAGACAAGAATTGAGGGTGCACCACAGATGAAAAAGAAGCGCAAGCATGGAGTTGGAGCAAAGGCATCTCAAAGCAGAAACAAATTTGGTTTTGAGGATTTGACATTACGCCTAAGAAAGAGCTTGGCTATGCATCAAGTTTTCCCTCAGGACGAGAAGGAGGCTGCGATCCTTCTCATGGCTTTATCTTATGGCCTTGTTCATGGATGA 930 0.4505 MIPAYRHSVSSVIPLDLNEDENHVNFTPTHHAYSSFSSLSSSNHVPFNPPDQEAGSHYWEPTKHLPIHQEAEKINPTMGSWDHSVAESELKVTVWKKKERSEDHEAAAEDGSVKWMTSKMRMMRKMMTMPDQTGAYIEENTMHKFEDQKQPLSPLGADNSSSNNYSNHSNNTVRVCADCHTTKTPLWRSGPRGPKSLCNACGIRQRKARRAMAAAASGNGKVIVEAEKSVKGNKLQKKEKKTRIEGAPQMKKKRKHGVGAKASQSRNKFGFEDLTLRLRKSLAMHQVFPQDEKEAAILLMALSYGLVHG 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03413 309 CDD ZnF_GATA 175 203 IPR000679 GO:0006355|GO:0043565
Spst3g03413 309 Pfam GATA zinc finger 176 209 IPR000679 GO:0006355|GO:0043565
Spst3g03413 309 FunFam GATA transcription factor 21 170 257 - -
Spst3g03413 309 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 168 210 - -
Spst3g03413 309 PANTHER GATA TRANSCRIPTION FACTOR 22-RELATED 1 309 - -
Spst3g03413 309 SMART GATA_3 170 221 IPR000679 GO:0006355|GO:0043565
Spst3g03413 309 MobiDBLite consensus disorder prediction 233 264 - -
Spst3g03413 309 ProSiteProfiles GATA-type zinc finger domain profile. 170 206 IPR000679 GO:0006355|GO:0043565
Spst3g03413 309 MobiDBLite consensus disorder prediction 247 261 - -
Spst3g03413 309 Gene3D - 166 257 IPR013088 GO:0006355|GO:0008270
Spst3g03413 309 ProSitePatterns GATA-type zinc finger domain. 176 201 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03413 Spst-Chr3 83960550 83961835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03413 87 309 C2C2-Gata Transcription Factor Family AT4G26150 40.234 1.28e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Spst3g03413 GATA 3.9e-17 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03413 - - gmx:100810698 413.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03413 3 83960550 83961835 Spst3g03413 3 83960550 83961835 ECH
Spst3g03413 3 83960550 83961835 Spst9g02882 9 62974582 62976028 PCT