Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03409 ATGGCTCCGAGAATCCTTCTATGCGGCGACGTTTTAGGTCGCCTAAACCAACTCTTCAAGCGTGTCTCTTCGGTGAGCAAATCTGCAGGTCCATTCGACGCGCTCTTGTGCGTAGGCCAGTTCTTCCCGGACTCACCGGAACAGTTGGAAGAGTTCACGGCGTTCATCGAAGGCGGTTCCCAGATTCCGCTTCCAACATACTTCGTCGGCGATTACGGCGTCGCCGCCCCTAAATTTCTCTTGCAAGCTTCCAAGGACTCCGCCAACCGCGGCTTCATGATGGACGGCTTCAAGGTTTGCGACAACCTGTATTGGTTGAAAGGCAGTGGCAAATTCCCCCTCTTTGGATTATCCGTGGCCTATTTATCTGAGACACAGTTAGTTGGTTACATTGGTGTCACTAATGGAGCAGCTGCTTCGGACATTCCTGCTGGAGTTTCTGATGCTGTAGGCAGTGATTCAACCATATCGGAGTTAGTACAAGAGATCAAACCACGTTATCACATTGCAGGCACTAAAGGTATATACTATGCCCGTGAACCATATACCAATGTTGATGCTGTGCATGTCACCCGTTTCATAGGGCTTGCTTCTGTTGGAAATAGAGATAAGCAGAAATTTATTCATGCAATCTCCCCCACGCCTGCTTCCACAATGTCTTCAACTGAGATTGCCGTGAAAACCACAAATACCACCTTATCGCCTTACACATTTGTGGAGAAAAAAACTTCTCCATTGGATTCCACAAAGAGATCCAGTGATTCTAACTCTGATGCTCAATATTGGAGATATGATGTTTCCCAAAAGAAACAAAAACATGAAACAAGACATGCTGATAAGATGTGTTTCAAATTTGTTTCTTCTGGATCTTGTCCACACGGAGAGAAGTGCCATTTTCAACATGATATAGATGCAAGGGAGCAGTGTAGGAGAGGTGTTTGTTTTGATTTTTTGAACAAGGGAAAATGTGAAAGGGGTCCAGATTGCAACTTTAAGCACAGCTTGCAGGATGAAGGTGACAGGCATTCTTCTAGGAGGCCTGGCTCTGGCAGATCAAAAGAATGTTGGTTTTGCTTGTCAAGCCCAAATGTGGAGACACATTTAATCATAAGCATTGGGGAAAATTATTACCTGGCACTTGCTAAAGGTCCACTTGTTGAGGACCATGCGCTGATAATACCAGTTGAGCATATGCCTAGTACCTTATCTATGTCTACTGAATCTGAAATTGAGCTCTCTAGGTTTCAAAACAGTCTCAAAAGTTACTGCAGGAGCCAAGAGAGGGAAGTCATCTTTTTTGAGTGGGCCTCCATCCGTGGCACTCATGCCAATCTTCAGGCCATTCCCATTCCATCTTCCAAAGCAGTTATGGTTGAAAAAGTTTTCAATTTAGCTGCACAGAAGTTGGGATTTGAATTTGTCGCTAAGACGTTTGATAGCATTTCTGATGGGAGGAAGTTTTTGAGGACGCAAATTGGTGGGGGTTCAAGCTTGTTCTATGCTCAAGTTTCAGGAGGCACAATTCTGCTGCATCATGTTGAAGAGAACGAGAGATTTCCTGTCCAATTTGGCCGTGAGGTTCTGGCCGGCTTGCTCAATATGGCAGATAATGCTGATTGGAGGAATCACAAACATAACAAAGATGAGGAAATGAAAATTGTTGATGATTTTAAGAGCCGATTTCAAGAATATGATCCAAACTGTTAA 1707 0.4435 MAPRILLCGDVLGRLNQLFKRVSSVSKSAGPFDALLCVGQFFPDSPEQLEEFTAFIEGGSQIPLPTYFVGDYGVAAPKFLLQASKDSANRGFMMDGFKVCDNLYWLKGSGKFPLFGLSVAYLSETQLVGYIGVTNGAAASDIPAGVSDAVGSDSTISELVQEIKPRYHIAGTKGIYYAREPYTNVDAVHVTRFIGLASVGNRDKQKFIHAISPTPASTMSSTEIAVKTTNTTLSPYTFVEKKTSPLDSTKRSSDSNSDAQYWRYDVSQKKQKHETRHADKMCFKFVSSGSCPHGEKCHFQHDIDAREQCRRGVCFDFLNKGKCERGPDCNFKHSLQDEGDRHSSRRPGSGRSKECWFCLSSPNVETHLIISIGENYYLALAKGPLVEDHALIIPVEHMPSTLSMSTESEIELSRFQNSLKSYCRSQEREVIFFEWASIRGTHANLQAIPIPSSKAVMVEKVFNLAAQKLGFEFVAKTFDSISDGRKFLRTQIGGGSSLFYAQVSGGTILLHHVEENERFPVQFGREVLAGLLNMADNADWRNHKHNKDEEMKIVDDFKSRFQEYDPNC 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03409 568 Gene3D - 271 352 - -
Spst3g03409 568 SUPERFAMILY CCCH zinc finger 310 337 IPR036855 GO:0046872
Spst3g03409 568 SMART c3hfinal6 278 303 IPR000571 GO:0046872
Spst3g03409 568 SMART c3hfinal6 310 335 IPR000571 GO:0046872
Spst3g03409 568 ProSiteProfiles Zinc finger C3H1-type profile. 281 304 IPR000571 GO:0046872
Spst3g03409 568 CDD MPP_CWF19_N 6 199 - -
Spst3g03409 568 ProSiteProfiles Zinc finger C3H1-type profile. 308 336 IPR000571 GO:0046872
Spst3g03409 568 Pfam Protein similar to CwfJ C-terminus 1 351 462 IPR006768 -
Spst3g03409 568 SUPERFAMILY HIT-like 353 423 IPR036265 -
Spst3g03409 568 SUPERFAMILY CCCH zinc finger 276 303 IPR036855 GO:0046872
Spst3g03409 568 PANTHER CWF19, CELL CYCLE CONTROL PROTEIN 4 113 IPR040194 -
Spst3g03409 568 Pfam Protein similar to CwfJ C-terminus 2 487 565 IPR006767 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Spst3g03409 CwfJ_C_1 3.1e-36 CL0265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03409 K24939 - gmx:100782106 1002.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03409 3 83889880 83895350 Spst3g03409 3 83889880 83895350 ECH