Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03401 ATGGATGCTCTCTTCGCCCTTCCTCCTGCCCCGAGAGCTGATTTTCTCCGCTCTCTGCTCCAATCTTTTCGCTGCACTTACGTTTCTCTCTGGCAGTATGATTCCAATCTATCCAATCGTTTGTTCTTCTTCGATGGTTTCTACCATCTACCCCACAACCAACCAACCTCTTCTTTAAGGACTCAGTCTCAAACCCTTTTTCACCAATATCGGGCTTTAACGTTTGATGTCAATGATAACTGTGTTCCTGGACTCGCTTTCAGAAACCACATTCCCTACATAGAGCTCCAACTATTAGATCTTTTAAGCCTGACATCCACCGAAATACAAAAACAATTCTTTCAGGAAGCAAGGATTGAGACTGGTATTCAGGAAGCGCTTAAGAACTTTCTGGAAACCCTTGGTGTGGTTCCTACGCAAACTAGCCCACACCAACAAAGTATCCAAGCATTACCCAAACCAGAGGATGAAGAAGAAGAAATAGTAAGGACATTAATCCAAGTTATATCTTCAACTTCTCTGCCGAATCAACCCCACCAAAATTTTCCCAATCGTTCTTCAATGATGCCTCTAGGAGATACAATGAGATATAAACCAAATATTATAAACCCAAATATAACACCCCATATTCCATCGTTTAGAAACTTAAATTTGAGAGAACACAATCAAGCAACCCATCAAATTGGTTCCCAGAAGTATTATCACACGATATCGGAAAGAAGACGTCGGGAAAAACTCAGTGAGAGTTTTCAGGCACTCAGCGCACTTCTTCCTCCGGGAACAAAGAAAAACAAAGGGTCGATTCTTTTAACAGCAAAGGAGACAATAAGATCTTTGATGGCTGAAAAGAAAAAGCTTATCATGAGAAATGAGCAGCTGATGAGAGTTTTATTAGGCAAAGAAGGTACTACTGGTAGTAGTGAAGAAAACAGAGGTAGGTCCTCTCACGAAATATTGAGTGTTGGGGTTTCGAATGTGTTGGAAGCAAGTTCATCAGAAGGGCGAATGGTGGACTTGCAAGTGATTGTGAGAGGAGAAAATTCTCAAGTTGTTGTTTTGATTCGCTTATTGGAATTCTTAGAACGGATTCAGAATGTAAGTTTGATTTCCACGAACACAAACACCCTTATTACAGGAGGGACAAAGATTAACGAATTAACTTTCAGGCTCAAGATTATTGAGGACAGTGAATGGGACGAGGGTTGCTTCGAGGAAGCAGTTAGAAGAAGGTTGCTGGCGTAA 1242 0.4122 MDALFALPPAPRADFLRSLLQSFRCTYVSLWQYDSNLSNRLFFFDGFYHLPHNQPTSSLRTQSQTLFHQYRALTFDVNDNCVPGLAFRNHIPYIELQLLDLLSLTSTEIQKQFFQEARIETGIQEALKNFLETLGVVPTQTSPHQQSIQALPKPEDEEEEIVRTLIQVISSTSLPNQPHQNFPNRSSMMPLGDTMRYKPNIINPNITPHIPSFRNLNLREHNQATHQIGSQKYYHTISERRRREKLSESFQALSALLPPGTKKNKGSILLTAKETIRSLMAEKKKLIMRNEQLMRVLLGKEGTTGSSEENRGRSSHEILSVGVSNVLEASSSEGRMVDLQVIVRGENSQVVVLIRLLEFLERIQNVSLISTNTNTLITGGTKINELTFRLKIIEDSEWDEGCFEEAVRRRLLA 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03401 413 Coils Coil 276 296 - -
Spst3g03401 413 Pfam Helix-loop-helix DNA-binding domain 234 279 IPR011598 GO:0046983
Spst3g03401 413 Gene3D - 229 300 IPR036638 GO:0046983
Spst3g03401 413 SMART finulus 236 285 IPR011598 GO:0046983
Spst3g03401 413 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 230 296 IPR036638 GO:0046983
Spst3g03401 413 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 174 409 IPR044658 -
Spst3g03401 413 CDD bHLH_AtbHLH_like 235 286 IPR045239 -
Spst3g03401 413 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 230 279 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03401 Spst-Chr3 83767418 83770660 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03401 235 409 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 47.486 1.29e-33 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst3g03401 HLH 3e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03401 - - gmx:102667064 391.734