Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03400 ATGGATGCTCTCTTCGCCCTTCCTCCTGCCCCGAGAGCTGATTTTCTCCGCTCTCTGCTCCAATCTTTTCGCTGCACTTACGTTTCTCTCTGGCAGTATGATTCCAATCTATCCAACTGTGTTCCTGGACTCGCTTTCAGAAACCACATTCCCTACATAGAGCTCCAACTATTAGATCTTTTAAGCCTGACATCCACCGAAATACAAAAACAATTCTTTCAGATTGCTGTTTTCATGGGGTGCAGAATGGGAGAAATAGAGCTTGGGTTCTCGAACAAGTCTCAAGCTGACATTCATACAGAACTTAAGAATTTATTCCCAGAAGATTTCTATACTCATTCCCAATCAATTGATCAGAATCCACAATCATCATCATCATCTTCTTTCATATCAATATCTACGGGTAGCCCTAATCAATGTTCACTCAATATTTCCGGCACTTCCCACTCCAACTTTCCTGAAGCCCTTGGTGTGGCTCCCCCACAACCTAGTCCACCCCAACAAACAATCCACGCATTATCTCAACCAAACTATTTAAATTTATCCACACCAGATGCTGAACATGAAGAAATAGTAAGAACATTAATCCAAGTTATATCTTCAACTTCGCAGCTGCATCAACCCCACCCAATTTTGCCTCATACTTCAGTAATACACCCTGAAACTACCGCTTTCACGAGATATAGACCAGATATGATAAACCCTGGTATAAAACCCCATACGGAGTCCAATTTTCGCAGGCAAAGCCTGCACAATACATCTTTTGCACTCTTTCAAAATTCAAATTCTAAGAGAATGAGAGAACGCGATACTATTCAAGTTCCCCATCCAATTAGTACCCAGCAACATTTTCATATGATATCAGAGAGAAGAAGGCGTGAAAAACTCAGCGACAGTTTTCAGGCACTTAGAGCACTTCTTCCTCCGGGAACTAAGAAAAACAAAGAGACAATCCTTTCAACAGCAATGGCTGAAATTGAAAAACTTAACATGAGAAAACAGCAGCCGATGACAGATTTGTCAGGCAAGGAAGGTAGTAGTTGTGAAGAAAACAGAGGTAGGTCCTCTAACGAAAGATTGGACGTTCGAGTTCGGCATACATCAGAATCAAGTTCATCAAAAGAGCATATGGTGGACTTGCAAGTGACGGTGAGAAGACAAAGTTCTCAAATTGATCTGTTGCTTCCCGTATTGAGATTCTTAGAAAGGGTTCAGAACGTAACCTTGATTTCTACGAACGCAAACAACCATGTTACAGAAGGAGGGGCAACCATTAATGAAATAACCTTCAGGCTGAGGATTATTGAGGGCAGTGAATGGGACAAACGCGAGTTCGAGGAAGCGATCAGAAGAGTGGTATTTGACGTAATACAACGCCAATTCCAACTATAA 1392 0.4174 MDALFALPPAPRADFLRSLLQSFRCTYVSLWQYDSNLSNCVPGLAFRNHIPYIELQLLDLLSLTSTEIQKQFFQIAVFMGCRMGEIELGFSNKSQADIHTELKNLFPEDFYTHSQSIDQNPQSSSSSSFISISTGSPNQCSLNISGTSHSNFPEALGVAPPQPSPPQQTIHALSQPNYLNLSTPDAEHEEIVRTLIQVISSTSQLHQPHPILPHTSVIHPETTAFTRYRPDMINPGIKPHTESNFRRQSLHNTSFALFQNSNSKRMRERDTIQVPHPISTQQHFHMISERRRREKLSDSFQALRALLPPGTKKNKETILSTAMAEIEKLNMRKQQPMTDLSGKEGSSCEENRGRSSNERLDVRVRHTSESSSSKEHMVDLQVTVRRQSSQIDLLLPVLRFLERVQNVTLISTNANNHVTEGGATINEITFRLRIIEGSEWDKREFEEAIRRVVFDVIQRQFQL 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03400 463 CDD bHLH_AtbHLH_like 285 334 IPR045239 -
Spst3g03400 463 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 281 336 IPR036638 GO:0046983
Spst3g03400 463 MobiDBLite consensus disorder prediction 345 373 - -
Spst3g03400 463 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 65 453 IPR044658 -
Spst3g03400 463 Gene3D - 277 342 IPR036638 GO:0046983
Spst3g03400 463 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 280 329 IPR011598 GO:0046983
Spst3g03400 463 Pfam Helix-loop-helix DNA-binding domain 285 329 IPR011598 GO:0046983
Spst3g03400 463 SMART finulus 286 335 IPR011598 GO:0046983
Spst3g03400 463 MobiDBLite consensus disorder prediction 331 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03400 Spst-Chr3 83757594 83760658 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03400 1 456 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 32.721 4.19e-53 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst3g03400 HLH 1.2e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03400 - - vum:124823621 489.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03400 3 83757594 83760658 Spst3g03400 3 83757594 83760658 ECH
Spst3g03400 3 83757594 83760658 Spst9g02866 9 62832879 62836695 PCT