Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03397 ATGGGAGAAGAAGTGACAAGAGTGAAAGCGGAGATGTTCGACGACAGTGAAAGCGATCGCCACGACGACGTTTTGAGCGAGAGCAAGGAATCCGGAGTGACGGAAGAGGCAACGACGGTTCACGTGAAAGAAGAGGTGGATGACGGCGCCGTCAACGGTTTGATGGATACGATGCCCAAACCCATGGAAGGGTTGCACGAGATGGGTCCCCCACCGTTCCTCAAGAAGACCTTCGAAATGGTGGAGGACCCTCGCACCGACCCCATAGTGTCGTGGAGCCAAACTCGCGATAGTTTCGTGGTTTGGGACTCTCACGAATTCTCCAAAACCCTTCTTCCCAAATACTTCAAGCACAGCAATTTCTCCAGCTTCGTTCGCCAGCTCAACACCTATGGTTTTAGGAAGGTTGATTCGGACCGTTGGGAGTTTGCCAATGAAGGATTCCAAGGAGGGAAGAAGTATTTGCTGAAGAACATAAGGAGGAGGAGTAAGTACAACAGACTGCATCAGGGAGCTTTCAATATGATGAAGTCAGGGGTGGAGGCTGAAGTGGAGAAACTGAAGAAGGACCAGAACATTTTGAAGGTGGAAATTCTGAAGCTGAGGCAGCAGCAAGAGAATTCGCATGTTCAGCTCACAAATGTTCAGGAGAGAGTTCGGTGTGCAGAGATGAAGCAGTATCAGATGATGTTTTTCCTCACCAGATTGGCTAGAAGGCCCGCGTTTGTTGAGCAATTAATCCAAAAGATTAGGAGAAAAAGAGAGCTTGATGGTAATGACATGGTTAAGAGGCCTAGATTGATGGGAAACCCCTGCCATGTACCCTTCCCTAAGACCATGGAGACAACCCCTAATGTTGATTATAGACACCAAAGTCATAAACAATTCCCTTCATTGCAATCCGAGCTTGATGGATTTCTGTCTGAAACTGTGAACATCAGCAGGATGGAGCACCCAACTCCCTCTCCTTTGGAAGATGATTTATGTAACCCTGTGCAAGGGTTAAGGCCACATGGTTGTTCTAGACCAAATGCGCCAGATGCATCTTCTGCCTACCATGTTATGTCAGAAAAACTAATGCGGGAAAATTCTATAGTTGATGAAGAACTAGATGTGAATGACTCGAATATCTATCTTGAATTGGAGGATTTGATTACAAAACCAACAGATTGGTCTCTTGGATCTGCAAGTGGATTGGTGGAACAAACTAGTTGA 1215 0.4658 MGEEVTRVKAEMFDDSESDRHDDVLSESKESGVTEEATTVHVKEEVDDGAVNGLMDTMPKPMEGLHEMGPPPFLKKTFEMVEDPRTDPIVSWSQTRDSFVVWDSHEFSKTLLPKYFKHSNFSSFVRQLNTYGFRKVDSDRWEFANEGFQGGKKYLLKNIRRRSKYNRLHQGAFNMMKSGVEAEVEKLKKDQNILKVEILKLRQQQENSHVQLTNVQERVRCAEMKQYQMMFFLTRLARRPAFVEQLIQKIRRKRELDGNDMVKRPRLMGNPCHVPFPKTMETTPNVDYRHQSHKQFPSLQSELDGFLSETVNISRMEHPTPSPLEDDLCNPVQGLRPHGCSRPNAPDASSAYHVMSEKLMRENSIVDEELDVNDSNIYLELEDLITKPTDWSLGSASGLVEQTS 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03397 404 Pfam HSF-type DNA-binding 73 162 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst3g03397 404 SUPERFAMILY "Winged helix" DNA-binding domain 69 162 IPR036390 -
Spst3g03397 404 Coils Coil 177 204 - -
Spst3g03397 404 ProSitePatterns HSF-type DNA-binding domain signature. 112 136 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst3g03397 404 SMART hsfneu3 69 162 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst3g03397 404 MobiDBLite consensus disorder prediction 1 38 - -
Spst3g03397 404 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 59 287 IPR027725 -
Spst3g03397 404 Gene3D - 66 163 IPR036388 -
Spst3g03397 404 PRINTS Heat shock factor (HSF) domain signature 73 96 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst3g03397 404 PRINTS Heat shock factor (HSF) domain signature 111 123 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst3g03397 404 PRINTS Heat shock factor (HSF) domain signature 124 136 IPR000232 GO:0003700|GO:0006355|GO:0043565
Spst3g03397 404 FunFam Heat shock transcription factor 1 66 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03397 Spst-Chr3 83715264 83717004 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03397 59 272 HSF AT2G26150 54.299 1.35e-80 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Spst3g03397 HSF_DNA-bind 1.8e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03397 K09419 - gmx:100818430 697.197