Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03388 ATGAGTACAAGAATTGCGAAGAGCCTGTGCAATGAGCGAGGACAGAGAACTATAAATTCAACGGTCGCTGAGGTAGTTGAAGAAGCAATTAAAAGTCGCGTTGACCAAGGAGAAATGTCCACTGCGCCGTCGGCGAGATCGGTTGCTGTTGCTGTGAGTGGCGGGTCCGGCAAGGGTAGCCGGCGAGCTGTGCAGTGGGCGGTGAATAATCTCGTCCCTCAAGCCGATAGGTTCATCTTAGTTCACGTCATTTCTCGAATCACATCAATTGTCACACCAACTGAAGAGTATATTCCTGTTTCGGAAGCAGACGCCGACGTGTTTGCAGCTTACGTGGACGATGTGAAGCAAAAATCTGAACAAATCTTCGTTCCGTTCAAGAAACTCTGCGATTCAAACACGATGGAAACCGTACTGCTAGAAGATGACAATGCTGCAGAAGCACTTATTAGCTTTATTTCGGAGTCCGGGGTCCAAACATTAGTGCTGGGTTCTGACTCTTCGAATTTTATAACAAGAAAGCTAAAAGGACCTGGAATACCAACTACCATTCTAAGATGTACTCCAGACAGTTGTGATGTGTATGTTGTAGCAAGAGACAGAATTGTATCGAAGTTGGCTGATTTGTCATCTTCACATTCTCATGAGACTGGCCCAAGTTACTTCATGTCTACTAAAGTAAATAAAGTAGACAATGAGGCTGGCATTGGCAGAGCAATATCCGGAATCAGTACATGCTCAACAGAATCTAAAATGCTAAGGAATTTCAGATTTTTATCAATATCCGAGCATAATTACGTTGGTCTGCAAACAATTAGTCGTAGGGATTCTTTTGAAAATTCTACCAAAAATGAAAATCCAGACTGTGGCGATGATATTGAAATTATCAGTCTCCATTCATTTGATTCCATTGCTACTGCACAACGTGAACAGTTAGTCATGCAAGAAGAAGTCGAACGGCTGCAACTGGAGTTGCAAAATACTATCGCCATGTACAAACAGGTTTGTGAAGAGCTGGTTGAAGCTCAAAACCAGGCCCTTTTACTTTCTTCTGAATCTCTTGAAGAAACTAAAAGAGTGAATGCTTCCATAAAAAGAGAGGAGGTTTTGAGAAAGATTGCTGCTGAAGAGAAAACTAACTATTTAAAAGTCATGAAGGATCTCGAGGAGGCGAAAAATAAGTTTGCCAAAGAGTCGTATGAAAGGCAGATGGCTGAACTTGATGTCCTTAAAGAATCAATAGAGAAACAGAGAATTGTTGATACATTGATCTCAAACGACATGAGATACAGAAAGTACACCATGGATGACATCAAGATAGCGACAAACTTCTTTTCTAAGGACTTGATGATTGGTGAAGGTGGATATGGGAAAGTTTACAAGTGTAATCTTGATCACACACCAGTAGCTGTTAAGGTTCTGCATCAGGATGCAATCAACAAGAAAGAGGAGTTTCTGAAAGAGGTTGAGATTCTTAGTCAACTGCATCATCCTCATATGGTTTTGTTACTTGGAGCCTGTCCTGAGACCGGTTGCCTTGTTTATGAATACCTGGAAAATGGAAGTCTGGAAGACTATCTTCTCAACCAAAATAGAAAACCACCTCTTCCTTGGTTTGTTCGATTTCGCATAGTCTTTGAAATGGCTTGTGGGTTGTCATTCTTGCATAATTCAAAGCCCGAGCCAATTGTCCATCGAGATATAAAACCTGGCAACATCTTGTTAGACAGAAATTATGTGAGCAAAATATCTGATGTTGGGCTGGCTAAACTCCTAGCAGAAGTCGTGCCTGACAACATTACAGAGTACAGAGAATCCATGCTTGCCGGTACTCTGCATTACATGGACCCAGAATATCAGAGAACTGGCACTGTCCGACCAAAATCAGATGTATATGCATTTGGAGTTATAACTCTCCAACTAATAACTGGTCGCCATGCACGTGGACTCATTGTGACTGTTGAAGATGCAATTAGAAATGGATCCTTCCGTGATATTTTAGATACATCAGCTGGAGATTGGCCACTAGATGAGACAGTGGAATTGGCTCAAGTTGCCCTTAAATGCACTGCACTTAGGTGCAGGGATAGACCAGAACTTGATACTGAAGTTCTTCCACTGCTCGAAAGATTTTCTAATGCGGCAAATGTAAGTGCAAGAATGGGAAGGAATAGTGTAAGTGCACCAAGCCAGTATTATTGTCCAATCCTTCAGGAAATCATGGATGATCCATATATTGCTGCGGATGGGTTTACTTATGAGTACAGAGCAATCAGGGCATGGCTCAGCAAACACAATGTGTCACCCATGACAAAGCTTAAGCTCCAGCATTCTGTGTTGACTCCAAACCATACTTTACGTTCTGCCATTCAGGAGTGGAATTCAGGAATGACCTTTTGA 2400 0.42 MSTRIAKSLCNERGQRTINSTVAEVVEEAIKSRVDQGEMSTAPSARSVAVAVSGGSGKGSRRAVQWAVNNLVPQADRFILVHVISRITSIVTPTEEYIPVSEADADVFAAYVDDVKQKSEQIFVPFKKLCDSNTMETVLLEDDNAAEALISFISESGVQTLVLGSDSSNFITRKLKGPGIPTTILRCTPDSCDVYVVARDRIVSKLADLSSSHSHETGPSYFMSTKVNKVDNEAGIGRAISGISTCSTESKMLRNFRFLSISEHNYVGLQTISRRDSFENSTKNENPDCGDDIEIISLHSFDSIATAQREQLVMQEEVERLQLELQNTIAMYKQVCEELVEAQNQALLLSSESLEETKRVNASIKREEVLRKIAAEEKTNYLKVMKDLEEAKNKFAKESYERQMAELDVLKESIEKQRIVDTLISNDMRYRKYTMDDIKIATNFFSKDLMIGEGGYGKVYKCNLDHTPVAVKVLHQDAINKKEEFLKEVEILSQLHHPHMVLLLGACPETGCLVYEYLENGSLEDYLLNQNRKPPLPWFVRFRIVFEMACGLSFLHNSKPEPIVHRDIKPGNILLDRNYVSKISDVGLAKLLAEVVPDNITEYRESMLAGTLHYMDPEYQRTGTVRPKSDVYAFGVITLQLITGRHARGLIVTVEDAIRNGSFRDILDTSAGDWPLDETVELAQVALKCTALRCRDRPELDTEVLPLLERFSNAANVSARMGRNSVSAPSQYYCPILQEIMDDPYIAADGFTYEYRAIRAWLSKHNVSPMTKLKLQHSVLTPNHTLRSAIQEWNSGMTF 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03388 799 Gene3D Transferase(Phosphotransferase) domain 1 518 727 - -
Spst3g03388 799 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 417 517 - -
Spst3g03388 799 ProSiteProfiles Protein kinase domain profile. 445 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g03388 799 SUPERFAMILY RING/U-box 723 793 - -
Spst3g03388 799 CDD STK_N 47 199 - -
Spst3g03388 799 Coils Coil 374 417 - -
Spst3g03388 799 Gene3D Phosphorylase Kinase; domain 1 424 517 - -
Spst3g03388 799 ProSitePatterns Serine/Threonine protein kinases active-site signature. 563 575 IPR008271 GO:0004672|GO:0006468
Spst3g03388 799 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 47 198 - -
Spst3g03388 799 ProSiteProfiles U-box domain profile. 727 799 IPR003613 GO:0004842|GO:0016567
Spst3g03388 799 Pfam U-box domain 729 794 IPR003613 GO:0004842|GO:0016567
Spst3g03388 799 PANTHER OS02G0152300 PROTEIN 48 792 - -
Spst3g03388 799 SUPERFAMILY Protein kinase-like (PK-like) 427 700 IPR011009 -
Spst3g03388 799 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 728 797 IPR013083 -
Spst3g03388 799 Pfam Protein tyrosine and serine/threonine kinase 450 701 IPR001245 GO:0004672|GO:0006468
Spst3g03388 799 SMART serkin_6 445 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g03388 799 Coils Coil 304 345 - -
Spst3g03388 799 Gene3D HUPs 45 197 IPR014729 -
Spst3g03388 799 CDD RING-Ubox_WDSUB1-like 729 783 - -
Spst3g03388 799 ProSitePatterns Protein kinases ATP-binding region signature. 451 472 IPR017441 GO:0005524
Spst3g03388 799 SMART Ubox_2 731 793 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03388 Spst-Chr3 83573432 83578123 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03388 42 795 Plant U-box Gene Family AT5G57035 52.000 0.0 810
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Spst3g03388 PK_Tyr_Ser-Thr 6.6e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03388 - - vun:114178082 1325.46