Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03382 ATGGTTTGGTTTCAATGCGAAGATTGCGGAGATAACCTCAAAAAACCCAAGTTGTCTAGTCACTTTCGAACTTGCTCCGCTTACAAATTGTCGTGCATTGACTGTGGGGAAATATTCGGGCGTGACACCGTTCAGAATCACACACAGTGCATTACAGAAGCGGAAAAGTATGGTCCAAAAGGCCAAGGCATAACTGCGAATGCTGCAACTGCCACGCCTAACAAGGATAACAAGCAAAGGCCTGAAGTTGATATTAATGTGGGGTTATCTGAGCGGCCTCCTTGGTTCTGTAGTCTTTGCAATACAAAAACTACAAGTAAGCAAACACTTCTTCTCCATGCTGATGGAAAGAAACACAGGGCAAAGGCAAGAGCATTCCATGCTTCAAAGCAACAACCAACCCAGGCAGATAAATCTGCTACTGGTGATGCTAAGGCTATTGTGGAGACTACTCCTGCTGATGAGGCGAGAGATGGCAAAAATGATGAACTGCCAAAATTGCAAGAGCCTTCAAAACAAAATGACTCAAAACCCAGGAATGAAATTTCTTCAGCAAAGAAAAAGAGGAAACTTGAAGCATTGGAGGCTGACCTTATTAAAAAAAGCAGGAATGACACTTCAGTTGACATGGGAAATGGTGAAGTAATTCAGGGTGAACAAGAAACAGGAGAGAGCAATTTGAAGAAAGAAGGGATGATAGAACCTCTCTGTACAAGTGCTGTCAAAAATAAAGTAAAATGGAAGAAATTTATCAAATCAGCCTTGAAATTGCATCCTGATGGAGTTTTGAAGATGAAAAAACTTAGAAAAGTTGTCCTCAAAGCACTGCAGGAATCAGGCATTGCAGTGGATGAAGCTGAATTTAGTGAGGCACTTGAGCAGAAGCTCCAGATTTGCAGTTGA 903 0.4197 MVWFQCEDCGDNLKKPKLSSHFRTCSAYKLSCIDCGEIFGRDTVQNHTQCITEAEKYGPKGQGITANAATATPNKDNKQRPEVDINVGLSERPPWFCSLCNTKTTSKQTLLLHADGKKHRAKARAFHASKQQPTQADKSATGDAKAIVETTPADEARDGKNDELPKLQEPSKQNDSKPRNEISSAKKKRKLEALEADLIKKSRNDTSVDMGNGEVIQGEQETGESNLKKEGMIEPLCTSAVKNKVKWKKFIKSALKLHPDGVLKMKKLRKVVLKALQESGIAVDEAEFSEALEQKLQICS 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03382 300 PANTHER CELL GROWTH-REGULATING NUCLEOLAR PROTEIN LYAR 1 297 IPR039999 GO:0003677
Spst3g03382 300 ProSiteProfiles Zinc finger C2HC LYAR-type profile. 27 51 - -
Spst3g03382 300 Pfam Zinc-finger of C2H2 type 95 119 - -
Spst3g03382 300 SUPERFAMILY beta-beta-alpha zinc fingers 30 58 IPR036236 -
Spst3g03382 300 SUPERFAMILY beta-beta-alpha zinc fingers 84 128 IPR036236 -
Spst3g03382 300 ProSiteProfiles Zinc finger C2HC LYAR-type profile. 1 26 - -
Spst3g03382 300 FunFam UBP1-associated proteins 1C 89 132 - -
Spst3g03382 300 SUPERFAMILY beta-beta-alpha zinc fingers 1 26 IPR036236 -
Spst3g03382 300 FunFam cell growth-regulating nucleolar protein-like 1 50 - -
Spst3g03382 300 Gene3D - 1 50 - -
Spst3g03382 300 Pfam LYAR-type C2HC zinc finger 30 57 IPR014898 -
Spst3g03382 300 Coils Coil 184 204 - -
Spst3g03382 300 MobiDBLite consensus disorder prediction 114 188 - -
Spst3g03382 300 MobiDBLite consensus disorder prediction 150 188 - -
Spst3g03382 300 Gene3D Classic Zinc Finger 89 137 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03382 77 192 C2H2 Transcription Factor Family AT2G19380 45.690 9.07e-17 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03382 K15263 - gmx:100790272 466.848
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03382 3 83507041 83510099 Spst3g03382 3 83507041 83510099 ECH