Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03374 ATGAAGCCATTCTTCTTGCTTAATCATCCTGATACTATGTACAATTCTTCTCAAGTTGATTGCAGTCATTCAATGGCCCATACTCCTTATCCTTGTGGTGATCCTTATTTTTCCAGTTCATTAGTTGCTTATGGACCACAGGCTATTAATCAACCCCAAATGATACCCCAGATGCTGGGATTAGCATCCACCAGAATTGCATTACCAGTGGAGCTTGCAGAAGATGGGCCCATTTATGTCAATGCAAAACAATATCATGGTATACTGAGAAGGCGACAGTCACGAGCAAAGCTAGAGGCTCAAAACAAACTCATCAAAAGTCGGAGGCCATATCTTCATGAGTCACGGCACCGTCACGCATTGAAGAGGGTTAGGGGGTCTGGTGGACGCTTTCTCAGTGCCAAACAGCTGCAAGAGTCTAATGCAGAACATGTTAATAGTACCCATTCAGGTCCGGACCCTATGAAAGTTTATCAAAAGAAGGATGCATCAGAGGTGGAAAGTCATCCCTCAAGGACGGGAGAGAATGCATCCATCACATTTACAGCCATCTCTGGCTTAACAGGCATGTCCAGTAGCAGTCTCAATTTCAGGCAGCCCGAACACAACTTCATGGGGAACTCCCCAAACATGGGGGGATCATCACAATGCAGCGGGGGACTCACGTTTGGTGGTGGAGCTCGGCAATGTGCTTCTGTTGGCCGGTGA 708 0.4675 MKPFFLLNHPDTMYNSSQVDCSHSMAHTPYPCGDPYFSSSLVAYGPQAINQPQMIPQMLGLASTRIALPVELAEDGPIYVNAKQYHGILRRRQSRAKLEAQNKLIKSRRPYLHESRHRHALKRVRGSGGRFLSAKQLQESNAEHVNSTHSGPDPMKVYQKKDASEVESHPSRTGENASITFTAISGLTGMSSSSLNFRQPEHNFMGNSPNMGGSSQCSGGLTFGGGARQCASVGR 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03374 235 SMART cbf3 73 134 IPR001289 GO:0003700|GO:0006355
Spst3g03374 235 ProSitePatterns NF-YA/HAP2 subunit signature. 79 99 IPR018362 GO:0003677|GO:0016602
Spst3g03374 235 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 77 131 IPR001289 GO:0003700|GO:0006355
Spst3g03374 235 PRINTS CCAAT-binding transcription factor subunit B signature 77 99 IPR001289 GO:0003700|GO:0006355
Spst3g03374 235 PRINTS CCAAT-binding transcription factor subunit B signature 108 131 IPR001289 GO:0003700|GO:0006355
Spst3g03374 235 ProSiteProfiles NF-YA/HAP2 family profile. 74 134 IPR001289 GO:0003700|GO:0006355
Spst3g03374 235 Gene3D - 74 136 - -
Spst3g03374 235 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 12 177 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03374 Spst-Chr3 83436275 83437725 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03374 45 140 CCAAT-HAP2 Transcription Factor Family AT1G54160 65.306 2.34e-39 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Spst3g03374 CBFB_NFYA 3.9e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03374 K08064 - gmx:100792905 407.142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03374 3 83436275 83437725 Spst3g03374 3 83436275 83437725 ECH