Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03368 ATGGGTGATTTCCAAGGCCCCTTCATAGTGTCCCCCCCTCCAGCACCCTCTTCCTCGGATAAGTCCAGCACAACCATGCTATACTATGGCCTAGTAGTGGTGGGGGTTGCAGCCATTGCATTAGCCCTATACAACTTCATCATCATCAGGAGAAGCAGGAGGCGCCACATGCAATCACAAGCTGAAGGGGCAAATGGGGTGGTGGAGGTGGTGATAGAAAGTAGGATAGAGAACTGCCAAATCAACTTCAACTTGGTCTCAAGCTTCAAGTACAAGAAAGGAGTTGTGGATTATGATGACGATGATGAATGCTCAGTTTGCTTATCGGGTTTTGAAGAAGGGGAAGAAGTTCGTAAGCTGCCACAGTGCAAGCACTGGTTCCACGCTCCATGCATAGACATGTGGCTCTACTCTCACTTGGATTGCCCAATTTGTCGAACACCTGTTGTGCGTTTCTCGCAGCACAATTCTCGTCCTGCATCACTGGAATCCGGTGGTGATGTCTCGGACCTGGCATTGCGCTGGAATTGTGACCACTCAGTCCTTCACACAACTTTCTCCACAAGGAACAGACACAGAGCTAAAGCACCCAACTTTGGATACCTTGTTTCTGATGTTACGTCACAAAAGAGGTTCAGAACTCCTCATTTTGATTTCTTCTCTTAA 666 0.4805 MGDFQGPFIVSPPPAPSSSDKSSTTMLYYGLVVVGVAAIALALYNFIIIRRSRRRHMQSQAEGANGVVEVVIESRIENCQINFNLVSSFKYKKGVVDYDDDDECSVCLSGFEEGEEVRKLPQCKHWFHAPCIDMWLYSHLDCPICRTPVVRFSQHNSRPASLESGGDVSDLALRWNCDHSVLHTTFSTRNRHRAKAPNFGYLVSDVTSQKRFRTPHFDFFS 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03368 221 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 151 IPR013083 -
Spst3g03368 221 ProSiteProfiles Zinc finger RING-type profile. 104 146 IPR001841 -
Spst3g03368 221 FunFam RING-H2 finger protein ATL52 68 151 - -
Spst3g03368 221 SUPERFAMILY RING/U-box 96 152 - -
Spst3g03368 221 CDD RING-H2_EL5-like 103 146 - -
Spst3g03368 221 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 19 152 IPR044675 -
Spst3g03368 221 Pfam Ring finger domain 102 146 IPR001841 -
Spst3g03368 221 SMART ring_2 104 145 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03368 Spst-Chr3 83383536 83384312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03368 31 150 C3H Transcription Factor Family AT5G17600 37.209 7.16e-20 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03368 - - vun:114177506 241.506
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03368 3 83383536 83384312 Spst3g03368 3 83383536 83384312 ECH
Spst3g03368 3 83383536 83384312 Spst9g02837 9 62581999 62582586 PCT