Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03363 ATGAGTCTCAGCCATAGCCAGAGCCAAGAGGACGCCCCCACCGCCTCCACCACCAACGACAACAACAACAACAATAACAACACCAACGATAACAACAAGCCTGATGATCACGAGCATGACATGGTTATGCCCGGTTTTCGCTTCCACCCAACCGAAGAAGAGCTCGTGGAATTCTACCTTCGCCGTAAGGTGGAGGGAAAGCGTTTCAACGTTGAACTCATTACTTTCCTCGATCTTTATCGCTATGACCCTTGGGAGCTTCCTGCTTTGGCAGCTATTGGTGAGAAGGAGTGGTACTTCTATGTGCCGAGAGATAGAAAGTATCGCAACGGTGATCGTCCCAATCGTGTCACTACCTCTGGGTATTGGAAGGCAACAGGAGCTGATAGGATGATCCGAACTGAGAATTTTCGCTCTATCGGCCTCAAGAAAACCCTAGTTTTCTATTCTGGAAAAGCTCCCAAAGGCATCCGAACAAGCTGGATTATGAACGAGTATCGCTTGCCGCAACATGAAACCGAACGATATCAAAAGGCTGAGATATCGCTCTGCCGTGTGTACAAGAGAGCTGGAGTAGAGGACCATCCCTCCCTCCCTCGCTGTCTCCCAACAAGGCCATCTTCATCAAGAGCTTCTTCGCATTCTGAAAATAAGAAGCACAACGAAATGGTTCACCCCAACATGGGTTTTGTGGGACAATCAAAGCCAACTGAACACCTAGTCGACAAAATGAATGAAACGGAAGCAAGCAGTGATGTCAACACGGCTCTTGGACTTTCCAAATACAATGCTTACCGTGCTGCAATGGGTGCACTCAGCACAACAATGGCACTTCCAGTTGTTCCAATGGACGAGGAAGGGTTGATGATGATGCAGCATCAGCAGCAATCTAAGCAAGCGGTAGTACATGCAGGTGCCCCGGGTATTGGCACGATCTTCTCTGCTGGGCCTTCTAGTTCCAACAACAGTGGAGTAGTGAACATGGATGATCTGAATAGGCTAATGAGTTATCAGCAGCAGTACTACAATGTTCAAAGCCATCCCAATCAGTTCTCTACTTTGCTGATGCAACCATCACCAGTAGTGTCTCTCAGCTCGCTACCAAATCCACTTCCAACCACCTTCTCTGACCGACTGTGGGAGTGGAATCCAATCCCTGAGCCACCAAATCAAGAGTACAGCAACATGTCCTTCAAGTAA 1200 0.4833 MSLSHSQSQEDAPTASTTNDNNNNNNNTNDNNKPDDHEHDMVMPGFRFHPTEEELVEFYLRRKVEGKRFNVELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRTENFRSIGLKKTLVFYSGKAPKGIRTSWIMNEYRLPQHETERYQKAEISLCRVYKRAGVEDHPSLPRCLPTRPSSSRASSHSENKKHNEMVHPNMGFVGQSKPTEHLVDKMNETEASSDVNTALGLSKYNAYRAAMGALSTTMALPVVPMDEEGLMMMQHQQQSKQAVVHAGAPGIGTIFSAGPSSSNNSGVVNMDDLNRLMSYQQQYYNVQSHPNQFSTLLMQPSPVVSLSSLPNPLPTTFSDRLWEWNPIPEPPNQEYSNMSFK 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03363 399 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 39 273 - -
Spst3g03363 399 Gene3D NAC domain 51 192 IPR036093 GO:0003677|GO:0006355
Spst3g03363 399 ProSiteProfiles NAC domain profile. 42 189 IPR003441 GO:0003677|GO:0006355
Spst3g03363 399 MobiDBLite consensus disorder prediction 1 43 - -
Spst3g03363 399 Pfam No apical meristem (NAM) protein 44 168 IPR003441 GO:0003677|GO:0006355
Spst3g03363 399 MobiDBLite consensus disorder prediction 195 227 - -
Spst3g03363 399 FunFam NAC domain-containing protein 35 51 192 - -
Spst3g03363 399 MobiDBLite consensus disorder prediction 1 30 - -
Spst3g03363 399 SUPERFAMILY NAC domain 42 188 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03363 Spst-Chr3 83348612 83350784 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03363 41 215 NAC Transcription Factor Family AT2G02450 88.000 1.45e-113 336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Spst3g03363 NAM 4e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03363 - - vum:124824712 695.656