Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03342 ATGGAAAGCAGATATGAGAATGAAGAAGAGGAAGAGCAAAACTGGAGGCTTTCCGGACCACATTCTGCTAACTTGCTGTTCACGAAGGCAGACGTGGAGGTTGATGTGGCGGCCGGAGCACAGCCGAAGAAAAGAACATTCAAGAAGTTCAGTTTCAGAGGCGTGGATCTGGACGCGCTTCTCGACATGTCCACTGATGAACTCGTGAAGCTCTTCAGTGCTCGTGCTCGTAGAAGGTTCCAGAGAGGACTCACCAGAAAGCCCATGGCCTTGATTAAGAAGCTCCGCAAAGCGAAAAGGGAAGCACCCGCAGGTGAGAAACCAGAGCCAGTGCGCACTCATCTCCGCAATATGATTATTGTCCCTGAGATGATCGGTAGTATCATTGGAGTGTACAATGGGAAGACCTTCAATCAGGTTGAAATCAAACCCGAAATGATTGGCCATTATCTTGCCGAGTTCTCCATTTCGTACAAACCGGTCAAGCACGGTAGACCTGGTATTGGTGCTACTCACTCGTCTAGGTTCATTCCTCTCAAGTGA 543 0.4917 MESRYENEEEEEQNWRLSGPHSANLLFTKADVEVDVAAGAQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLTRKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03342 180 PRINTS Ribosomal protein S19 family signature 145 160 IPR002222 GO:0003735|GO:0005840|GO:0006412
Spst3g03342 180 PRINTS Ribosomal protein S19 family signature 113 132 IPR002222 GO:0003735|GO:0005840|GO:0006412
Spst3g03342 180 PRINTS Ribosomal protein S19 family signature 133 145 IPR002222 GO:0003735|GO:0005840|GO:0006412
Spst3g03342 180 PANTHER RIBOSOMAL PROTEIN S19P FAMILY MEMBER 37 180 IPR002222 GO:0003735|GO:0005840|GO:0006412
Spst3g03342 180 Hamap 30S ribosomal protein S19 [rpsS]. 76 169 IPR002222 GO:0003735|GO:0005840|GO:0006412
Spst3g03342 180 FunFam 40S ribosomal protein S15 37 180 - -
Spst3g03342 180 Pfam Ribosomal protein S19 78 163 IPR002222 GO:0003735|GO:0005840|GO:0006412
Spst3g03342 180 Gene3D 30s Ribosomal Protein S19; Chain A 36 180 IPR023575 GO:0003735|GO:0005840|GO:0006412
Spst3g03342 180 ProSitePatterns Ribosomal protein S19 signature. 133 157 IPR020934 GO:0003723
Spst3g03342 180 NCBIfam 30S ribosomal protein S19 47 180 IPR005713 GO:0003735|GO:0006412|GO:0015935
Spst3g03342 180 SUPERFAMILY Ribosomal protein S19 83 164 IPR023575 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03342 Spst-Chr3 83197771 83203519 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03342 35 180 Cytoplasmic Ribosomal Protein Gene Family AT5G09500 89.041 6.98e-93 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03342 K02958 - gmx:100801408 290.812