Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03333 ATGAAACGCCCAAACGACGAGGTCGCCAACCCCTCAACAGTGAAACCAACGTTCCTAACGAAAGCCCAACGCGAGCAATTGGCTCTTCAACGCCGCCAGGAAGAGGTGGCGGAGCAGAAGCGGCGCCAGGAGCAGCTCCTCTCACGCAACAACTCCTCCGATCCCAAACCCTCCTCCGACCGCGACAGAGACAGAGACAGAGAAAGGGACAGAGACCGTGACAACAGGGAGCGCGACCGGGACCGCGATAGAGACAGGGACAGAGACCGCGACCGCGAGAGGGCACGTGACCGGGACCGCGAATCCGAACGCCGCAACAGAGAGAGGGAGCGCGAAGAGGAAACCCGGGCTCGCGAGCGAGCTCGCTCGGAGAAACTTGCGGAGCGCGAGAGGGCACGTGACCGGGACCGGGAAGCCGAACGCCGTAACAGAGAGAGGGAGCGTGAAGAGGAGACCCGGGCCCGCGAGCGAGCTCGCTTGGAGAAACTCGCGGAGCGCGAGCGCGAGAAGGAGCTTGAGTCCATCAAGGAGCAGTACCTCGGCTCCAAAAAGCCCAAGAAGCGCGTAATCAAGCCCAGCGAGAAGTTCCGGTTCTCCTTCGATTGGGAGAACACGGAGGACACCTCGCGGGACATGAACTCTCTCTACCAGAACCCACACGAGGCTCAGCTTCTCTTCGGCCGCGGCTTCCGCGCCGGCATGGACCGCCGCGAGCAGAAGAAGCTCGCCGCCAAGAATGAAAAGGAGATGCGTGAGCAAATCCGCAAGAAGGACGGTGTCGAGGAGAAGCCCGAGGAGGCCGACGCCCAGCGCCGCAAGGAGGCCGCCGCCGACCTCTACGACACCTTCGACATGCGTGTCGACCGCCACTGGAGCGAGAAGAAGCTCGAAGAGATGACTGAGAGGGATTGGCGCATCTTCAGAGAAGACTACAACATCTCCTACAAGGGTTCCAAGATTCCTCGCCCTATGAGGAGCTGGAACGAGAGCAAGTTGAGCCTCGAGCTCTTGAAGGCTGTGGAGAAGGCTGGCTATAAAACCCCTTCTCCTATTCAAATGGCAGCCATTCCCCTTGGCTTGCAGCAGCGTGATGTCATTGGCATTGCCGAGACCGGTTCCGGGAAAACCGCGGCGTTTGTGCTTCCCATGTTGAGCTACATCACCAGGCTTCCACCCATGAGTGAGGACAACGAGGCTGAGGGTCCCTATGCGGTTGTCATGGCCCCCACTCGCGAGCTCGCGCAGCAGATTGAGGATGAGACTGTTAAGTTTGCGCAGTATTTGGGCATCAAGGTGGTGTCCATTGTTGGTGGACAGTCCATTGAGGAGCAAGGATTTAAGATCAGGCAGGGCTGTGAGATTGTCATTGCCACTCCTGGACGTTTGATTGATTGCTTGGAGCGGCGCTATGCTGTTCTCAACCAGTGCAATTATGTTGTTCTTGATGAGGCGGATCGCATGATTGACATGGGGTTTGAGCCCCAGGTGATGGGTGTCCTTGATGCCATGCCTTCTAGCAATCTCAAACCGGAGAATGAGGATGAGGAGCTTGATGAAAAGAAGATTTATCGGACCACTTATATGTTCAGTGCCACCATGCCCCCTGCTGTGGAGAGGCTTGCCAGGAAATATTTGAGGAACCCTGTTGTGGTTACCATTGGCACTGCTGGAAAGGCAACTGATTTGATCAGCCAGCATGTGATCATGATGAAGGAGTCTGAGAAATTTTACAAGCTTCAGAGATTGCTTGATGAGCTTAATGACAAGACTGCAATTGTGTTTGTCAACACCAAGAAGAATGCGGATATGGTTGCTAAGAATTTGGATAAGGAAGGGTATCGTGTAACCACTTTGCATGGAGGGAAGTCACAGGAGCAGAGAGAGATTAGTCTTGAAGGGTTTAGGACCAAGAGATATAATGTTCTTGTTGCAACTGATGTTGCCGGACGTGGGATTGACATACCTGATGTGGCTCATGTTATCAACTATGATATGCCTGGGAATATTGAAATGTACACTCACCGTATTGGGCGTACTGGTCGTGCAGGAAAGACCGGTGTAGCTACAACATTCTTGACTCTTCAGGACAGTGATGTCTTTTATGACCTCAAGCAGATGCTCATTCAAAGTAATAGTCCTGTTCCACCTGAACTCGCAAGGCATGAAGCTTCAAAATTCAAGCCAGGATCGATTCCTGACAGACCACCTAGACGAAATGACACTGTTTTTGCGCATTAG 2238 0.5407 MKRPNDEVANPSTVKPTFLTKAQREQLALQRRQEEVAEQKRRQEQLLSRNNSSDPKPSSDRDRDRDRERDRDRDNRERDRDRDRDRDRDRDRERARDRDRESERRNREREREEETRARERARSEKLAERERARDRDREAERRNREREREEETRARERARLEKLAEREREKELESIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNSLYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREQIRKKDGVEEKPEEADAQRRKEAAADLYDTFDMRVDRHWSEKKLEEMTERDWRIFREDYNISYKGSKIPRPMRSWNESKLSLELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPMSEDNEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKESEKFYKLQRLLDELNDKTAIVFVNTKKNADMVAKNLDKEGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLQDSDVFYDLKQMLIQSNSPVPPELARHEASKFKPGSIPDRPPRRNDTVFAH 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03333 745 CDD DEADc_DDX23 336 552 - -
Spst3g03333 745 MobiDBLite consensus disorder prediction 242 273 - -
Spst3g03333 745 Coils Coil 92 173 - -
Spst3g03333 745 MobiDBLite consensus disorder prediction 27 47 - -
Spst3g03333 745 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 578 722 IPR001650 -
Spst3g03333 745 Gene3D - 286 555 IPR027417 -
Spst3g03333 745 MobiDBLite consensus disorder prediction 10 26 - -
Spst3g03333 745 Pfam Helicase conserved C-terminal domain 577 683 IPR001650 -
Spst3g03333 745 CDD SF2_C_DEAD 563 692 - -
Spst3g03333 745 Gene3D - 556 743 IPR027417 -
Spst3g03333 745 FunFam probable ATP-dependent RNA helicase DDX23 286 555 - -
Spst3g03333 745 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 325 353 IPR014014 GO:0003724
Spst3g03333 745 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 401 704 IPR027417 -
Spst3g03333 745 SMART ultradead3 344 566 IPR014001 -
Spst3g03333 745 MobiDBLite consensus disorder prediction 55 184 - -
Spst3g03333 745 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 356 551 IPR014001 -
Spst3g03333 745 MobiDBLite consensus disorder prediction 720 745 - -
Spst3g03333 745 Pfam DEAD/DEAH box helicase 350 540 IPR011545 GO:0003676|GO:0005524
Spst3g03333 745 Coils Coil 237 263 - -
Spst3g03333 745 Coils Coil 19 49 - -
Spst3g03333 745 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 480 488 IPR000629 -
Spst3g03333 745 SMART helicmild6 602 683 IPR001650 -
Spst3g03333 745 MobiDBLite consensus disorder prediction 713 745 - -
Spst3g03333 745 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 259 722 - -
Spst3g03333 745 MobiDBLite consensus disorder prediction 1 188 - -
Spst3g03333 745 FunFam probable ATP-dependent RNA helicase DDX23 556 744 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03333 Spst-Chr3 83143128 83145365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03333 323 705 Eukaryotic Initiation Factors Gene Family AT3G19760 32.031 7.33e-61 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03333 K12858 - gmx:100799264 1135.94