Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Spst3g03333 | ATGAAACGCCCAAACGACGAGGTCGCCAACCCCTCAACAGTGAAACCAACGTTCCTAACGAAAGCCCAACGCGAGCAATTGGCTCTTCAACGCCGCCAGGAAGAGGTGGCGGAGCAGAAGCGGCGCCAGGAGCAGCTCCTCTCACGCAACAACTCCTCCGATCCCAAACCCTCCTCCGACCGCGACAGAGACAGAGACAGAGAAAGGGACAGAGACCGTGACAACAGGGAGCGCGACCGGGACCGCGATAGAGACAGGGACAGAGACCGCGACCGCGAGAGGGCACGTGACCGGGACCGCGAATCCGAACGCCGCAACAGAGAGAGGGAGCGCGAAGAGGAAACCCGGGCTCGCGAGCGAGCTCGCTCGGAGAAACTTGCGGAGCGCGAGAGGGCACGTGACCGGGACCGGGAAGCCGAACGCCGTAACAGAGAGAGGGAGCGTGAAGAGGAGACCCGGGCCCGCGAGCGAGCTCGCTTGGAGAAACTCGCGGAGCGCGAGCGCGAGAAGGAGCTTGAGTCCATCAAGGAGCAGTACCTCGGCTCCAAAAAGCCCAAGAAGCGCGTAATCAAGCCCAGCGAGAAGTTCCGGTTCTCCTTCGATTGGGAGAACACGGAGGACACCTCGCGGGACATGAACTCTCTCTACCAGAACCCACACGAGGCTCAGCTTCTCTTCGGCCGCGGCTTCCGCGCCGGCATGGACCGCCGCGAGCAGAAGAAGCTCGCCGCCAAGAATGAAAAGGAGATGCGTGAGCAAATCCGCAAGAAGGACGGTGTCGAGGAGAAGCCCGAGGAGGCCGACGCCCAGCGCCGCAAGGAGGCCGCCGCCGACCTCTACGACACCTTCGACATGCGTGTCGACCGCCACTGGAGCGAGAAGAAGCTCGAAGAGATGACTGAGAGGGATTGGCGCATCTTCAGAGAAGACTACAACATCTCCTACAAGGGTTCCAAGATTCCTCGCCCTATGAGGAGCTGGAACGAGAGCAAGTTGAGCCTCGAGCTCTTGAAGGCTGTGGAGAAGGCTGGCTATAAAACCCCTTCTCCTATTCAAATGGCAGCCATTCCCCTTGGCTTGCAGCAGCGTGATGTCATTGGCATTGCCGAGACCGGTTCCGGGAAAACCGCGGCGTTTGTGCTTCCCATGTTGAGCTACATCACCAGGCTTCCACCCATGAGTGAGGACAACGAGGCTGAGGGTCCCTATGCGGTTGTCATGGCCCCCACTCGCGAGCTCGCGCAGCAGATTGAGGATGAGACTGTTAAGTTTGCGCAGTATTTGGGCATCAAGGTGGTGTCCATTGTTGGTGGACAGTCCATTGAGGAGCAAGGATTTAAGATCAGGCAGGGCTGTGAGATTGTCATTGCCACTCCTGGACGTTTGATTGATTGCTTGGAGCGGCGCTATGCTGTTCTCAACCAGTGCAATTATGTTGTTCTTGATGAGGCGGATCGCATGATTGACATGGGGTTTGAGCCCCAGGTGATGGGTGTCCTTGATGCCATGCCTTCTAGCAATCTCAAACCGGAGAATGAGGATGAGGAGCTTGATGAAAAGAAGATTTATCGGACCACTTATATGTTCAGTGCCACCATGCCCCCTGCTGTGGAGAGGCTTGCCAGGAAATATTTGAGGAACCCTGTTGTGGTTACCATTGGCACTGCTGGAAAGGCAACTGATTTGATCAGCCAGCATGTGATCATGATGAAGGAGTCTGAGAAATTTTACAAGCTTCAGAGATTGCTTGATGAGCTTAATGACAAGACTGCAATTGTGTTTGTCAACACCAAGAAGAATGCGGATATGGTTGCTAAGAATTTGGATAAGGAAGGGTATCGTGTAACCACTTTGCATGGAGGGAAGTCACAGGAGCAGAGAGAGATTAGTCTTGAAGGGTTTAGGACCAAGAGATATAATGTTCTTGTTGCAACTGATGTTGCCGGACGTGGGATTGACATACCTGATGTGGCTCATGTTATCAACTATGATATGCCTGGGAATATTGAAATGTACACTCACCGTATTGGGCGTACTGGTCGTGCAGGAAAGACCGGTGTAGCTACAACATTCTTGACTCTTCAGGACAGTGATGTCTTTTATGACCTCAAGCAGATGCTCATTCAAAGTAATAGTCCTGTTCCACCTGAACTCGCAAGGCATGAAGCTTCAAAATTCAAGCCAGGATCGATTCCTGACAGACCACCTAGACGAAATGACACTGTTTTTGCGCATTAG | 2238 | 0.5407 | MKRPNDEVANPSTVKPTFLTKAQREQLALQRRQEEVAEQKRRQEQLLSRNNSSDPKPSSDRDRDRDRERDRDRDNRERDRDRDRDRDRDRDRERARDRDRESERRNREREREEETRARERARSEKLAERERARDRDREAERRNREREREEETRARERARLEKLAEREREKELESIKEQYLGSKKPKKRVIKPSEKFRFSFDWENTEDTSRDMNSLYQNPHEAQLLFGRGFRAGMDRREQKKLAAKNEKEMREQIRKKDGVEEKPEEADAQRRKEAAADLYDTFDMRVDRHWSEKKLEEMTERDWRIFREDYNISYKGSKIPRPMRSWNESKLSLELLKAVEKAGYKTPSPIQMAAIPLGLQQRDVIGIAETGSGKTAAFVLPMLSYITRLPPMSEDNEAEGPYAVVMAPTRELAQQIEDETVKFAQYLGIKVVSIVGGQSIEEQGFKIRQGCEIVIATPGRLIDCLERRYAVLNQCNYVVLDEADRMIDMGFEPQVMGVLDAMPSSNLKPENEDEELDEKKIYRTTYMFSATMPPAVERLARKYLRNPVVVTIGTAGKATDLISQHVIMMKESEKFYKLQRLLDELNDKTAIVFVNTKKNADMVAKNLDKEGYRVTTLHGGKSQEQREISLEGFRTKRYNVLVATDVAGRGIDIPDVAHVINYDMPGNIEMYTHRIGRTGRAGKTGVATTFLTLQDSDVFYDLKQMLIQSNSPVPPELARHEASKFKPGSIPDRPPRRNDTVFAH | 745 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Spst3g03333 | 745 | CDD | DEADc_DDX23 | 336 | 552 | - | - | |
Spst3g03333 | 745 | MobiDBLite | consensus disorder prediction | 242 | 273 | - | - | |
Spst3g03333 | 745 | Coils | Coil | 92 | 173 | - | - | |
Spst3g03333 | 745 | MobiDBLite | consensus disorder prediction | 27 | 47 | - | - | |
Spst3g03333 | 745 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 578 | 722 | IPR001650 | - | |
Spst3g03333 | 745 | Gene3D | - | 286 | 555 | IPR027417 | - | |
Spst3g03333 | 745 | MobiDBLite | consensus disorder prediction | 10 | 26 | - | - | |
Spst3g03333 | 745 | Pfam | Helicase conserved C-terminal domain | 577 | 683 | IPR001650 | - | |
Spst3g03333 | 745 | CDD | SF2_C_DEAD | 563 | 692 | - | - | |
Spst3g03333 | 745 | Gene3D | - | 556 | 743 | IPR027417 | - | |
Spst3g03333 | 745 | FunFam | probable ATP-dependent RNA helicase DDX23 | 286 | 555 | - | - | |
Spst3g03333 | 745 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 325 | 353 | IPR014014 | GO:0003724 | |
Spst3g03333 | 745 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 401 | 704 | IPR027417 | - | |
Spst3g03333 | 745 | SMART | ultradead3 | 344 | 566 | IPR014001 | - | |
Spst3g03333 | 745 | MobiDBLite | consensus disorder prediction | 55 | 184 | - | - | |
Spst3g03333 | 745 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 356 | 551 | IPR014001 | - | |
Spst3g03333 | 745 | MobiDBLite | consensus disorder prediction | 720 | 745 | - | - | |
Spst3g03333 | 745 | Pfam | DEAD/DEAH box helicase | 350 | 540 | IPR011545 | GO:0003676|GO:0005524 | |
Spst3g03333 | 745 | Coils | Coil | 237 | 263 | - | - | |
Spst3g03333 | 745 | Coils | Coil | 19 | 49 | - | - | |
Spst3g03333 | 745 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 480 | 488 | IPR000629 | - | |
Spst3g03333 | 745 | SMART | helicmild6 | 602 | 683 | IPR001650 | - | |
Spst3g03333 | 745 | MobiDBLite | consensus disorder prediction | 713 | 745 | - | - | |
Spst3g03333 | 745 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 259 | 722 | - | - | |
Spst3g03333 | 745 | MobiDBLite | consensus disorder prediction | 1 | 188 | - | - | |
Spst3g03333 | 745 | FunFam | probable ATP-dependent RNA helicase DDX23 | 556 | 744 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Spst3g03333 | Spst-Chr3 | 83143128 | 83145365 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Spst3g03333 | 323 | 705 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 32.031 | 7.33e-61 | 209 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Spst3g03333 | K12858 | - | gmx:100799264 | 1135.94 |