Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03322 ATGGAAGGTGGAGGCTTTCATGGCTACCGCAAGCTCCCCAGCACCACCTCTGGGTTGAAGCTGTCAGTGTCATCAGACATGAACAACTTGAACATGAGGCAGGTAGCAGGAGACAACAGCCACGCATCAGAGGAGAACAACGAATGCACCGTGAGGGAGCAAGACCGTTTCATGCCAATTGCAAATGTGATCAGGATCATGCGAAAGATTCTCCCCCCGCATGCCAAAATCTCAGATGATGCCAAGGAAACAATTCAAGAGTGTGTATCTGAGTACATCAGCTTTATCACCGGAGAGGCGAACGAGCGTTGCCAGAGGGAACAACGCAAGACCATAACTGCTGAGGATGTGCTTTGGGCCATGAGCAAGCTTGGATTTGATGATTACATCGAACCACTGACCATGTACCTTCACAGGTACCGTGAGCTTGAGGGTGACCGTACCTCCATGAGGGGTGAACCACTGGGGAAGAGGACTATTGAATACGCCCCTATGGGTGTTGGTGTTGCTACTGCTTTTGTTCCACCACCGTTTCACCCCAATGCTTACTATGGTCCTGCCATGGGGACTTATGTAGCGCCACCAAATGCCACGTCCTCTCACCACCATGGAATGCCCAATGCTGAACCGAATTCTCGCTCCATGTGA 648 0.5123 MEGGGFHGYRKLPSTTSGLKLSVSSDMNNLNMRQVAGDNSHASEENNECTVREQDRFMPIANVIRIMRKILPPHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPLTMYLHRYRELEGDRTSMRGEPLGKRTIEYAPMGVGVATAFVPPPFHPNAYYGPAMGTYVAPPNATSSHHHGMPNAEPNSRSM 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03322 215 FunFam Nuclear transcription factor Y subunit B-6 46 162 - -
Spst3g03322 215 Gene3D Histone, subunit A 44 161 IPR009072 GO:0046982
Spst3g03322 215 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 57 121 IPR003958 -
Spst3g03322 215 PRINTS CCAAT-binding transcription factor subunit A signature 104 122 - -
Spst3g03322 215 PRINTS CCAAT-binding transcription factor subunit A signature 123 141 - -
Spst3g03322 215 PRINTS CCAAT-binding transcription factor subunit A signature 85 103 - -
Spst3g03322 215 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 38 189 IPR027113 GO:0001228|GO:0006355|GO:0016602
Spst3g03322 215 SUPERFAMILY Histone-fold 54 152 IPR009072 GO:0046982
Spst3g03322 215 ProSitePatterns NF-YB/HAP3 subunit signature. 88 104 IPR003956 GO:0005634|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03322 Spst-Chr3 83075576 83077596 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03322 1 147 CCAAT-HAP3 Transcription Factor Family AT5G47670 74.342 5.94e-74 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Spst3g03322 CBFD_NFYB_HMF 5.9e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03322 K08065 - gmx:100800011 340.117