Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03319 ATGGCTGAATCTGACAACGAGTCAGGAGGTGGAAAAAATGAATTGTCAATTTGCAGAGAGCAAGACAGGCTCCTTCCCATAGCCAACGTGGGCAGGATCATGAAGAAGGTGTTGCCAGGCAACGCCAAGATTTCCAAAGAATCGAAAGAAACCATGCAAGAGTGTGTGTCTGAGTTCATCAGTTTCGTAACAGGAGAGGCTTCTGATAAGTGTCAGAAAGAGAAAAGAAAGACCGTCAACGGGGATGATCTTCTGTGCGCCATGACCTCACTTGGCTTTGAAGACTATGCAGAGCCCCTCAAAGCTTACCTGCACAAGTACAGGGAGATGGAAGGGGAAAAAACTGCTATGATAGGGAAGCACCATGCTACTTCTGACCATTATGCAAATCCACTGTAA 399 0.4637 MAESDNESGGGKNELSICREQDRLLPIANVGRIMKKVLPGNAKISKESKETMQECVSEFISFVTGEASDKCQKEKRKTVNGDDLLCAMTSLGFEDYAEPLKAYLHKYREMEGEKTAMIGKHHATSDHYANPL 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03319 132 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 24 88 IPR003958 -
Spst3g03319 132 SUPERFAMILY Histone-fold 21 122 IPR009072 GO:0046982
Spst3g03319 132 ProSitePatterns NF-YB/HAP3 subunit signature. 55 71 IPR003956 GO:0005634|GO:0006355|GO:0043565
Spst3g03319 132 Gene3D Histone, subunit A 13 130 IPR009072 GO:0046982
Spst3g03319 132 PRINTS CCAAT-binding transcription factor subunit A signature 71 89 - -
Spst3g03319 132 PRINTS CCAAT-binding transcription factor subunit A signature 52 70 - -
Spst3g03319 132 PRINTS CCAAT-binding transcription factor subunit A signature 90 108 - -
Spst3g03319 132 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 13 117 IPR027113 GO:0001228|GO:0006355|GO:0016602
Spst3g03319 132 FunFam Nuclear transcription factor Y subunit B-3 13 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03319 Spst-Chr3 83063466 83063864 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03319 1 121 CCAAT-HAP3 Transcription Factor Family AT4G14540 74.590 4.61e-64 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Spst3g03319 CBFD_NFYB_HMF 2.1e-26 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03319 K08065 - gmx:100305641 212.231
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03319 3 83063466 83063864 Spst6g01295 6 11907883 11908416 PCT