Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03310 ATGGAAGCGCTCAGGTATTCTAAAGCTGCCTATGATAAATATCTTATGTATGGAGACATATCTACTAAGGCAGCTCACATGCTATCACTTCCTAAGGTTTCAGATTTCTTTACAAGGTTAATACAAAGAGTTTCTCCAAAGAGTTACCAGCAGGCTTTTGGAGAAGTCTATGTGACACAAAAGTTTCTAGAGAATTTTTGCGGGGATCAGGTTCGTTTCTTAGCAAGATCATTTGCAGTACCCGGAAATCATCTTGGACAACAAAGTCATGGTTTTCGTTGGCCCTATGGTCCTGTGGCAATTATTACTCCTTTTAATTTTCCCTTAGAGATTCCTGTTCTTCAATTGATGGGTGCACTCTATATGGGCAACAAACCAGTCCTTAAAGTTGATAGCAAGGTGAGCATTGTCATGGAACAAATGTTACGTCTGCTTCACACCTGTGGCTTACCTGTTGAAGATGTAGACTTCATAAATTCTGACGGGAAGACAATGAACAAACTGTTACTGGAGATGATATTGGATCATGAAGTAGTATTGAATTTACAGGCAAATCCACGAATGACCCTTTTTACTGGTAGTTCAAGAGTGGCTGAGAAGTTAGCCCTTGATTTGAAGGGCCGTGTTAAATTGGAAGATGCTGGATTTGACTGGAAAATACTGGGTCCTGATGTCCATCAGGAAGATTACACTGCGTGGGTGTGTGATCAAGATGCATATGCATGCAGTGGTCAGAAATGCTCTGCCCAATCATTATTATTTATGCACGAGAACTGGTCTAAAACTTCCTTGCTATCGAAGTTAAAAGATCTTGCTGAAAGAAGAAAGTTGACAGACTTGACAATTGGCCCAGTCCTCACAGTTACGACTGATTCTATGCTTGAACATGTCAATAAGTTGCTTGAGATACCAGGATCAAAGCTGCTCTTCGGAGGTCGACCTTTGGAGGATCATTCAATTCCGTCTATTTATGGTGCTATTAAACCAACAGCTGTTTATGTTCCTCTTGAGGAAATTATGAAGGATAACAATTTTGAACTTGTGACAAAAGAAATATTCGGACCCTTCCAGATTATTACCGATTACAAAAATAGTCAACTATCAGTTGTATTGGATGCTTTGGAAAGAATGCATAACCATTTGACAGCTGCTGTAGTTTCGAATGATCCTTTATTTGTGCAGGAAGTCATTGGCAAGACGGTAAATGGTACTACTTATGCTGGTTTAAGAGCAAGGACAACCGGAGCTCCACAGAATCATTGGTTTGGACCCGCCGGTGATCCTAGAGGTGCAGGAATTGGTACTCCAGAGGCCATAAAACTTGTATGGTCTTGTCACAGAGAAGTTATCTATGATTATGGGCCGGTGTCAAAGAATTGGGAAATTCCTCCATCTACTTGA 1401 0.4069 MEALRYSKAAYDKYLMYGDISTKAAHMLSLPKVSDFFTRLIQRVSPKSYQQAFGEVYVTQKFLENFCGDQVRFLARSFAVPGNHLGQQSHGFRWPYGPVAIITPFNFPLEIPVLQLMGALYMGNKPVLKVDSKVSIVMEQMLRLLHTCGLPVEDVDFINSDGKTMNKLLLEMILDHEVVLNLQANPRMTLFTGSSRVAEKLALDLKGRVKLEDAGFDWKILGPDVHQEDYTAWVCDQDAYACSGQKCSAQSLLFMHENWSKTSLLSKLKDLAERRKLTDLTIGPVLTVTTDSMLEHVNKLLEIPGSKLLFGGRPLEDHSIPSIYGAIKPTAVYVPLEEIMKDNNFELVTKEIFGPFQIITDYKNSQLSVVLDALERMHNHLTAAVVSNDPLFVQEVIGKTVNGTTYAGLRARTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHREVIYDYGPVSKNWEIPPST 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03310 466 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 240 251 IPR016160 GO:0016491
Spst3g03310 466 SUPERFAMILY ALDH-like 26 434 IPR016161 GO:0016491
Spst3g03310 466 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 17 217 IPR016162 GO:0016491
Spst3g03310 466 FunFam Aldehyde dehydrogenase 12 223 411 - -
Spst3g03310 466 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 218 407 IPR016163 GO:0016620
Spst3g03310 466 PANTHER ALPHA-AMINOADIPIC SEMIALDEHYDE DEHYDROGENASE 18 466 IPR044638 GO:0004029
Spst3g03310 466 FunFam probable aldehyde dehydrogenase 3 215 - -
Spst3g03310 466 Pfam Aldehyde dehydrogenase family 33 408 IPR015590 GO:0016491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03310 Spst-Chr3 82930263 82934981 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03310 12 466 Aldehyde Dehydrogenase Gene Family AT5G62530 82.237 0.0 806
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03310 K00294 - gmx:100806579 843.958