Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03303 ATGGGTGTTGACGAGGAGGGTCGGCAGTCATTGCTTTCAGAACATCTCAATGAGAAAAATGACCTCCAGAGGAAAAGGCCTAGAAGTGGTAATGCTTCGGAGAAGGAGGTCAATCTCCAAGGGCAAAATGCTGATGATCAAAACCCTTTACATCCTCGACGTATAGATGCCAAACCAGAAGCAGAATTCCATTTCAAGCCAGTTTTCTTATGGTTAGCTGCATACCTTGGCGGAGGAACCATTTGCTTCCTTCTAACAAATAATCAGATAAAGGGCATAAAAACCAATGGGTTTCTTGATGCCATTTACTTCTGTGTTGTAACAATGACAACAGTTGGATATGGAGATCTTGTGCCAGATAGCCAACTTTCAAAACTTATTGCTTGCGTTTACGTCTTCACTGGCATGGCTCTTGTAGGGCTAATTCTTAGCAAGGCAGCAGATTATATCGTTGAAAAGCAGGAAATCATCCTAGTTAAAACCTTATTTATAGGTGAAAATTTTGGTCCAGAAGAGATTTCCAAAGAGATTAAAACTAACAAAGCTAAATACAAATTCATGCTGGCAGCATCCATCTTTTTGGTGCTTATGATTGTGGGGACTATTTTCCTGTATTTTATTGAAAATTTAGATTTTGTTGATGCCCTCTATTGTGTTTGCTCCACAGTCACCACTCTAGGTTATGGGGATAAGAGCTTTTCCAGTACTGCTGGTCGTGCTTTTGCTGTGTTCTGGATATTGAGCAGCACCATTTGCTTAGCTCAGTCTTTTGCTTATCTTGCTGAATTTTATACTGAAAAAAGACAAAAGTTACTAGCAAAAATGGTTCTTGAACGAAAATTGTCAATCCTTGATCTTGAGGCCGCTGATCTTGATGGAGATCATGTTGTCAGTGCTACAGAGTTCGTTTTGTACAAGTTGAAGGAAATGGGAAAGATCAACCAAGAAGATATTTTAGTTGTTATGGATATTTTTAGACAACTAGATTTTGATCAATCAGGAACCCTGACAGAAGCTGATATCAGACATAATGAATCATCTTAA 1044 0.3889 MGVDEEGRQSLLSEHLNEKNDLQRKRPRSGNASEKEVNLQGQNADDQNPLHPRRIDAKPEAEFHFKPVFLWLAAYLGGGTICFLLTNNQIKGIKTNGFLDAIYFCVVTMTTVGYGDLVPDSQLSKLIACVYVFTGMALVGLILSKAADYIVEKQEIILVKTLFIGENFGPEEISKEIKTNKAKYKFMLAASIFLVLMIVGTIFLYFIENLDFVDALYCVCSTVTTLGYGDKSFSSTAGRAFAVFWILSSTICLAQSFAYLAEFYTEKRQKLLAKMVLERKLSILDLEAADLDGDHVVSATEFVLYKLKEMGKINQEDILVVMDIFRQLDFDQSGTLTEADIRHNESS 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03303 347 SUPERFAMILY Voltage-gated potassium channels 66 152 - -
Spst3g03303 347 MobiDBLite consensus disorder prediction 33 47 - -
Spst3g03303 347 PANTHER POTASSIUM CHANNEL, SUBFAMILY K 68 318 IPR003280 GO:0005267|GO:0016020|GO:0071805
Spst3g03303 347 MobiDBLite consensus disorder prediction 1 32 - -
Spst3g03303 347 PRINTS Two pore domain K+ channel signature 107 135 IPR003280 GO:0005267|GO:0016020|GO:0071805
Spst3g03303 347 PRINTS Two pore domain K+ channel signature 224 233 IPR003280 GO:0005267|GO:0016020|GO:0071805
Spst3g03303 347 FunFam Calcium-activated outward-rectifying potassium channel 1 62 157 - -
Spst3g03303 347 ProSitePatterns EF-hand calcium-binding domain. 329 341 IPR018247 -
Spst3g03303 347 Gene3D - 169 263 - -
Spst3g03303 347 MobiDBLite consensus disorder prediction 1 53 - -
Spst3g03303 347 SUPERFAMILY EF-hand 287 343 IPR011992 -
Spst3g03303 347 Gene3D - 264 346 - -
Spst3g03303 347 Gene3D - 57 160 - -
Spst3g03303 347 ProSitePatterns EF-hand calcium-binding domain. 290 302 IPR018247 -
Spst3g03303 347 Pfam Ion channel 72 151 IPR013099 -
Spst3g03303 347 Pfam Ion channel 192 265 IPR013099 -
Spst3g03303 347 SUPERFAMILY Voltage-gated potassium channels 179 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03303 Spst-Chr3 82844389 82845632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03303 46 341 Ion Channels AT5G55630 57.770 4.91e-123 357
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03303 K05389 - gmx:100799492 568.54