Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03284 ATGGTTTCTGCGGAGAACGATTCGCATTCCACTACCACTGAAGCTACACATTCTCATTCCACGGTTTCCAACAAACCTCACCGAAACATCGGCAAGTCTATGCGGACCGTGCGTTCCAAATTATTCCCACGCGACCACGCCAGGTGCGTCTCCGATAGCCTAACCGATTCGCTCATGGAACTCGCTTCGCGAAACAACAAGTCCGTTAAATCTTCCGTTACGGAGGAGCAGCTTCTCGAGCTCTCGCAAGCTTTGAGCGATTTCTCGGCTTGCAGCAGCGATATCTCGGGAGAGCTCCAGAGGCTCGCCACGGTCACCTCCTCCGAACCTGCTGCTGACGTTGGCCGGGAGCCTGAAGCTGAGGTCGAGCCTTGCTTAGGGTTTCTCCAACGTGAGAGTTTCTCCACGGAGATCATCGAGAGTATCTCGCCGGAGGATCTTCAGCCGACGGTGAAGATCTGTGTCGACGGACTGCAGTCGACGTCGGTGGCGGTGAAGCGATCGGCGGCGGCAAAGCTGAGGCTGTTGGCGAAGAACAGAGCGGATAACCGTGCTCTGATCGGCGAGTCCGGTGCAGTGCCTGCGCTGGTTCCGCTACTCCGCTGCAGCGATCCGTGGACGCAGGAGCACGCAGTGACGGCGTTGCTGAATCTGTCTCTTCTGGAGGAGAACAAGGCGCTGATAACGAATGCCGGTGCGGTGAAGTCGCTGATTTACGTGCTTAAGACAGGTACGGAGACTTCGAAGCAGAACGCGGCTTGCGCGCTGATGAGTCTTGCGTTGGTGGAGGAGAACAAGAGCTCGATCGGTGCTTGCGGGGCGATACCGCCGCTGGTGTCGCTGCTGCTGAGTGGGTCCCACAGAGGGAAGAAGGACGCGCTGACGACGCTGTATAAGCTGTGTTCGGTGCGGCAGAACAAGGAGAGGGCGGTGAGCGCAGGGGCGGTGAGGCCGTTGGTGGAGCTGGTAGCGGAGGAGGGGAGCGGGATGGCGGACAAGGCGATGGTGGTGCTGAACAGTTTGGCGGGGATTGAGGAGGGGAAGGAGGCGATCGTAGAAGAAGGTGGAATTGCTGCGCTTGTGGAAGCGATTGAAGATGGGACGGTGAAGGGGAAGGAGTTTGCTGTTTTGACTCTTGTTCAGCTCTGTGCTCACAGTGGCAGGAACAGAGGATTGCTTGTGAGAGAAGGTGGCATTCCTCCACTCGTTGCTCTTTCTCAGAACGGCTCTGTTCGAGCTAAGCATAAGGCTGAGACACTCCTTGGATATTTGAGAGAATCAAGAAATGAGGCGTCCTGTTCAAGTCCTTAG 1311 0.5698 MVSAENDSHSTTTEATHSHSTVSNKPHRNIGKSMRTVRSKLFPRDHARCVSDSLTDSLMELASRNNKSVKSSVTEEQLLELSQALSDFSACSSDISGELQRLATVTSSEPAADVGREPEAEVEPCLGFLQRESFSTEIIESISPEDLQPTVKICVDGLQSTSVAVKRSAAAKLRLLAKNRADNRALIGESGAVPALVPLLRCSDPWTQEHAVTALLNLSLLEENKALITNAGAVKSLIYVLKTGTETSKQNAACALMSLALVEENKSSIGACGAIPPLVSLLLSGSHRGKKDALTTLYKLCSVRQNKERAVSAGAVRPLVELVAEEGSGMADKAMVVLNSLAGIEEGKEAIVEEGGIAALVEAIEDGTVKGKEFAVLTLVQLCAHSGRNRGLLVREGGIPPLVALSQNGSVRAKHKAETLLGYLRESRNEASCSSP 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03284 436 Pfam Armadillo/beta-catenin-like repeat 264 302 IPR000225 GO:0005515
Spst3g03284 436 Pfam Armadillo/beta-catenin-like repeat 182 219 IPR000225 GO:0005515
Spst3g03284 436 SUPERFAMILY ARM repeat 147 425 IPR016024 -
Spst3g03284 436 PANTHER U BOX DOMAIN-CONTAINING 107 424 - -
Spst3g03284 436 SMART arm_5 385 426 IPR000225 GO:0005515
Spst3g03284 436 SMART arm_5 262 302 IPR000225 GO:0005515
Spst3g03284 436 SMART arm_5 221 261 IPR000225 GO:0005515
Spst3g03284 436 SMART arm_5 180 220 IPR000225 GO:0005515
Spst3g03284 436 SMART arm_5 344 384 IPR000225 GO:0005515
Spst3g03284 436 MobiDBLite consensus disorder prediction 1 33 - -
Spst3g03284 436 FunFam U-box domain-containing protein 4 290 431 - -
Spst3g03284 436 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 191 233 IPR000225 GO:0005515
Spst3g03284 436 Gene3D - 128 434 IPR011989 -
Spst3g03284 436 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 273 315 IPR000225 GO:0005515
Spst3g03284 436 MobiDBLite consensus disorder prediction 1 30 - -
Spst3g03284 436 FunFam U-box domain-containing protein 4 137 289 - -
Spst3g03284 436 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 314 356 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03284 Spst-Chr3 82731654 82733918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03284 92 429 U-box Gene Family AT2G23140 46.286 4.54e-84 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03284 - - gmx:100792402 679.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03284 3 82731654 82733918 Spst6g01269 6 11699724 11701547 PCT