Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03274 ATGTCTATAATTGAAACCCCCGCCGTCCACCACCTCAGCGGGGGCGCCTCCGATCACCATCGTCACTCATCCAAACGCAAACTCGAGGATGAAGATGACGGAGATTTCTCGGACTTAGTCTGTGTGAGGATGCGGAAAGAGGAGGCGGTGAATTCGTGGTGTGGCTCCTCCACCACCGCCGGCAGCGGCTGCTCCTCCGCAGCCGCCCCCTTGCCGAAGCAGCGATCTCACATCCAGTTCTTTGTGCGAATGATGTCTGCCGGGAACACGATTGTGATGCAGGCCTTCGCCGAAGACAGCGTGAAATCGATTCACGAGCGTATCCAAAGCATGAAGGGAATCCCGGTGTTTGAACAGAGGCTAATTTATCGTGGGAAGCAGCTTCAGTGGGAGCAGACTCTCGCCGAGTGTTCCATTCAAAACGACGCCAATCTTCAACTCGTTGGTCGTATGCGCAGTACTGAACACCCTCAAGCATGGCAAATTATCAACGACATGGTTTCCCTCGTGTATCGACTCTGCTGTGGCGAGGCTATTCATGATTCCTTGAAGACTATAAAGGGATTAATAACCAGTTACTTGAACATGACTCCGAGGATTGACAACGAATCTGCTTCTGGGTATTTTCAGATTTTCATGTCTTCTTCTGCTCCTGACGTGCTTGTTATGCTCTATGTGTCCCCCTATGCAGGAAACAAGGAATCTGCTGATTCTACTGTTAGGCACTTTTTGAGATCTTGCCCGAATACCTTGTCTAAGGCATTGCACGGGCAGTGTGCGTGTGTGGTGTTGGAATTTTGTAAACTGCTTAGGAGAGTGGGAAGTAATGATCCCCTATATCTTTTTTGTCGGAGTACCTTTGGGTCCTTGTTAGAAACTGCTGGGGTTTCCTTTGCTGGTTCTGATAATGCTAAGGGGTTGGTTATGATTAAGGACATTTTCCCCTTTGTTTTTGAGCTTGCTAATAGCTTGTTGAGGGACTTGGACTTGAGTATGGAATCCCACACGGCCGTGGGACCTTTGTCGAGTGATGTTGAGGATTTTACTGCCTTCTTAGTTCCTTTGAGGACTGGAATTAAGGAGCAACAAGCTCTCAACGGTTCTTTGTCTCAAGGCAAAAGCAATAAGGATCTCTTGCACGCGAAAGAGATTGAACACCTTCATTGTTTATACGTCCAGTTATTGAGCAAAATCGACCAGTGCCTTCAAAAAGTGGACCAGAGCTTGGCTGGCCAGGAAGTGATGGAAGGGGATAATCTTTATCCTGCGTGGTCTCATTATCTTTCCATCTTGAAGGAGTTGTATCAAATTTCTAAGCTTTATGATGGTGCTGAAGAAAAGCTTTGGAGTGTTTTGAAGCGACACAGAAGTGTGCTGTGTTTGTTGATTGTTCGATATGCAAAGAGAACTGATGAGCATCAGTGGATATTGGAGCATAGGTATGTGACTAATTTTGAGTCTAGAAGGCATTTGGCCATGATGATGTTCCCAGAAGTCAAAGAAGACTATGAAGAATTGCACGAAATGCTTATTGACAGATCTCAGTTGTTGGCTGAGTCTTTTGAATACATAGCACGTGCTGAGCCTGAATCTCTGCATGCTGGCTTATTTATGGAATTCAAAAATGAGGAAGCTACTGGCCCAGGTGTACTAAGGGAGTGGTTTCTACTGGTATGTCAAGCAATATTCAATCCGCAAAATGCTCTTTTTGTGGCATGCCCGAATGATCGAAGGAGATTTTTCCCTAATCCTGCATCTAAGGTACATCCTCTGCACCTTGAGTACTTCAGCTTTGCTGGTCGAGTTATTGCATTAGCTTTGATGCATAGGGTGCAAGTGGGTATTGTTTTTGATCGTGTGTTTTTCTTGCAATTGGCGGGAAACTATATTGCTTTAGAGGATATCAGGGATGCAGATCCTTGTCTCTATAATAGCTGCAAGCAAATATTGGATATGGATGCTGATTTCATTGATTCAGATGCATTAGGACTGACATTTGTTAGGGAGGTGGAGGAGTTAGGACAGAGGAAAGTGGTTGAGCTCTGCCTTGGGGGAAAAAACCTTGTAGTTAATAGTAAGAACAGAGACCAGTATGTTGAACTTCTTATACAGGATCGCTTTGTAACATCCATATCTGAGCAGGTATCACATTTCGCCAAAGGTTTTGCTGATATTCTTTCAAACTCCAAGCTCCAGCAGTACTTCTTCCAAAGTTTAGACCTTGAAGATCTTGATTGGATGCTGCATGGCAGTGAAGACACCATTTCTGTTGAAGATTGGAAAGCACACACCGAATATAATGGTTATAGAGAGACAGATATTCAGATATCATGGTTTTGGGAGATTGTTGGGAGAATGACAGCAGATCAAAGGAAGGTTCTTCTATTCTTTTGGACGTCTGTAAAATATTTACCAGTTGAAGGTTTCAGTGGTTTGGCTTCACGACTCTACATATACAGATCCCTTGAACCTGGTGATCGCCTGCCTTCATCTCACACATGCTTTTTCCGGCTGTGTTTCCCGGCTTACTCATCTATGGCTGTCATGAAAGAACGTCTTGAACTTATCACTCAAGAACACATTGGCTGCAGTTTTGGTACTTGGTGA 2607 0.4476 MSIIETPAVHHLSGGASDHHRHSSKRKLEDEDDGDFSDLVCVRMRKEEAVNSWCGSSTTAGSGCSSAAAPLPKQRSHIQFFVRMMSAGNTIVMQAFAEDSVKSIHERIQSMKGIPVFEQRLIYRGKQLQWEQTLAECSIQNDANLQLVGRMRSTEHPQAWQIINDMVSLVYRLCCGEAIHDSLKTIKGLITSYLNMTPRIDNESASGYFQIFMSSSAPDVLVMLYVSPYAGNKESADSTVRHFLRSCPNTLSKALHGQCACVVLEFCKLLRRVGSNDPLYLFCRSTFGSLLETAGVSFAGSDNAKGLVMIKDIFPFVFELANSLLRDLDLSMESHTAVGPLSSDVEDFTAFLVPLRTGIKEQQALNGSLSQGKSNKDLLHAKEIEHLHCLYVQLLSKIDQCLQKVDQSLAGQEVMEGDNLYPAWSHYLSILKELYQISKLYDGAEEKLWSVLKRHRSVLCLLIVRYAKRTDEHQWILEHRYVTNFESRRHLAMMMFPEVKEDYEELHEMLIDRSQLLAESFEYIARAEPESLHAGLFMEFKNEEATGPGVLREWFLLVCQAIFNPQNALFVACPNDRRRFFPNPASKVHPLHLEYFSFAGRVIALALMHRVQVGIVFDRVFFLQLAGNYIALEDIRDADPCLYNSCKQILDMDADFIDSDALGLTFVREVEELGQRKVVELCLGGKNLVVNSKNRDQYVELLIQDRFVTSISEQVSHFAKGFADILSNSKLQQYFFQSLDLEDLDWMLHGSEDTISVEDWKAHTEYNGYRETDIQISWFWEIVGRMTADQRKVLLFFWTSVKYLPVEGFSGLASRLYIYRSLEPGDRLPSSHTCFFRLCFPAYSSMAVMKERLELITQEHIGCSFGTW 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03274 868 SMART hect_3 526 866 IPR000569 GO:0004842
Spst3g03274 868 SUPERFAMILY Hect, E3 ligase catalytic domain 503 854 IPR035983 GO:0004842
Spst3g03274 868 SMART ubq_7 78 150 IPR000626 GO:0005515
Spst3g03274 868 MobiDBLite consensus disorder prediction 1 32 - -
Spst3g03274 868 CDD HECTc 507 866 IPR000569 GO:0004842
Spst3g03274 868 Pfam Ubiquitin family 81 152 IPR000626 GO:0005515
Spst3g03274 868 FunFam E3 ubiquitin-protein ligase UPL5 752 867 - -
Spst3g03274 868 SUPERFAMILY Ubiquitin-like 78 165 IPR029071 -
Spst3g03274 868 Gene3D Hect, E3 ligase catalytic domain 751 867 - -
Spst3g03274 868 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 628 710 - -
Spst3g03274 868 PANTHER HECT DOMAIN UBIQUITIN-PROTEIN LIGASE 78 866 - -
Spst3g03274 868 PRINTS Ubiquitin signature 131 152 IPR019956 -
Spst3g03274 868 PRINTS Ubiquitin signature 89 109 IPR019956 -
Spst3g03274 868 PRINTS Ubiquitin signature 110 130 IPR019956 -
Spst3g03274 868 ProSiteProfiles Ubiquitin domain profile. 78 154 IPR000626 GO:0005515
Spst3g03274 868 MobiDBLite consensus disorder prediction 14 32 - -
Spst3g03274 868 Pfam HECT-domain (ubiquitin-transferase) 557 860 IPR000569 GO:0004842
Spst3g03274 868 Gene3D - 72 166 - -
Spst3g03274 868 Gene3D Hect, E3 ligase catalytic domains 510 741 - -
Spst3g03274 868 ProSiteProfiles HECT domain profile. 528 868 IPR000569 GO:0004842
Spst3g03274 868 FunFam E3 ubiquitin-protein ligase UPL5 isoform A 71 166 - -
Spst3g03274 868 Gene3D Hect, E3 ligase catalytic domain 628 710 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03274 Spst-Chr3 82649713 82657263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03274 78 152 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 40.000 1.80e-12 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03274 - - gmx:100789233 1540.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03274 3 82649713 82657263 Spst6g01260 6 11602072 11606998 PCT