Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03257 ATGGGGAAATCGGGGGGTAGAAGAAAGAAGGGTGGTTCGAACCCGAACCAAAACCAAGGTGTGGTTGATAATTCGGGTTCAGGTGGGGCAGTCCCAATGGCTAACGGTGGGGTGGAGTTGTTGGATTCGTCGATATTTTTGAAGAAGGCGAATGAGATGAAAGAGGAAGGGAATAGGAGGTTCCAGAGTAAGGACTATGCAGGTGCTCTTGAACAGTACGAGAGTGCTCTTCGTTTAACCCCCAAAACGCACCCTGACAGAGCCGTGTTCCACAGCAACAGGGCTGCGTGTTTGATGCAGATGAAGCCCATAGATTATGAAGCCGTCATTGCTGAGTGCACCATGGCGCTTCAGGTCCAGCCCTGTTATGCCCGGGCCCTTCTTCGCCGGGCCCGCGCCTTCGAGGCTGTTGGGAAGTATGAAATGGCTGTGCAGGATGTGCAGTTCTTGTTGGCTGCTGATCCTAGTAACCGTGATGCTTTGGAGATCGCCCAGAGATTGAGAACTGCGTTGGGGCCGCGCCAGGAAGCCCAGCAGGACCTTCAAAGTAGACCCTCTCCAGCTGCCCTTGGAGCTTCCGCGGTCCGTGGCGCCCCTATTGCTGGTTTAGGGCCATGTTTGCCAGCCCGTCCTGTGGCGAAGAAGGGAGTGAACTCAGCAGTTGGATCTGCTATGTTGCCTAATAATAACAAGCTAGACAACAAGGCACAGCAGGTTTTGCCTACTGAAAATGGTTCTGATAGCAAGTCCCACTTGCCAAAATTGGTGTTGAAGCCTTTAAATGGTTCTGCAAAGCCACCTATACCTGGAAAGGATGCTGACAAGGAACAGGCATTGGCCATTCGTGGGCAGCGTTCTGAGGCTGCAATTCGCTGGAGACCATTGAAGCTTGTTTATGATCATGACATTAGGCTCGCACAGATGCCAGTCAATTGCAGCTTTAGAGTACTGAGGGATATAGTGAGCAAAAGATTTCCTTCATCGAGTTCTGTTCTGATCAAGTATAAGGATTGCGATGGTGATCTGGTTACTATAACCTCTACTGATGAACTCAGACTGGCAGAGTCTAGTGTTGATAGCCATCTCCTCAAAGAACTTGGGGAGGTTAAAAGTGATTCTGTTTCAATGCTCAGACTGCATATTGTTGAAGTAAGTCCGGAGCAGGAGCCACCTTTATTGGAAGAAGAGGAAGAAAAACTGGTTGAGAATGAAGGGGTCAAAGGAGATGAGGGCGGATCTCATTCTTCCCTTGGTGAATCTGTCTCTGAAGTTCCTGATAATGAGGTTGATAAGGTAGGGAAGGAAGCTCCAAAGGAAAAGCCAGGCGCCACAGGAGATACTGAATGCAAAGAGGTGGAGATGGATGATTGGTTGTTTGAGTTTGCTCAGCTTTTCCGCTCACATGTTGGTATTGATCCAGATGCTCATATTGACTTGCATGAGCTTGGGATGGAGCTTTGTTCTGAGGCACTCGAGGAAACAGTTACTAGTGAGGAGGCTCAGGAACTGTTTGACAAGGCTGCTTCAAAGTTTCAGGAGGTTGCTGCTTTGGCTTTCTTCAACTGGGGTAATGTTCACATGTGTGCAGCTAGGAAGCGGATTCCTCTGGATGAATCAGCTGGGAAAGAGGTAGTGGCAGAGCAGCTTCAAGTGGCTTATGAATGGGTCAAGGAAAAGTATTCTTTGGCCAGAGAGAAGTACGAGGAAGCCCTCTCGATCAAATCAGACTTTTATGAGGGACTGTTGGCTCTGGGGCAGCAGCAATTTGAAATGGCTAAACTTAATTGGTCTTTTGCACTTGCTAAGAAGATGGATCTATCTGGCTGGGATTCTAAGGAGACACTTAATCTTTTTGACAGTGCAGAAGAGAAGATGAAGGCGGCAACAGATATGTGGGAGAAACTAGAGGAACAGAGAGCAAAAGAGCTAAAGGACCCAAATGCAACCAAGAAAGAGGAATTATTGAGAAGAAGAAAGAAACAAGTGGGTGCTACTGAAGGTGAATCCTCCACTGTTGGAGGACAGGGTGATATATCCGCAGAGGAAGCTGCTGAGCAAGCAGCTGTCATGAGATCTCAAATTCACCTCTTTTGGGGTAATATGCTTTTTGAAAGATCCCAAGTTGAATGCAAATTGGGAATGAATGGATGGAAGGAAAACCTGGATGCTGCAACTGAACGCTTCAAGCTTGCAGGAGCTTCTGAGGCAGATATTTCTATGGTTCTAAAGAATCATTGCTCAAATGGAAATGCTAAAGATGGAGATGATAAAAAGGTTGAGAACACACAGCACAATAAGACCATTAAACCAGAGATTAATAAGGCTAATCAAGTATGA 2337 0.4724 MGKSGGRRKKGGSNPNQNQGVVDNSGSGGAVPMANGGVELLDSSIFLKKANEMKEEGNRRFQSKDYAGALEQYESALRLTPKTHPDRAVFHSNRAACLMQMKPIDYEAVIAECTMALQVQPCYARALLRRARAFEAVGKYEMAVQDVQFLLAADPSNRDALEIAQRLRTALGPRQEAQQDLQSRPSPAALGASAVRGAPIAGLGPCLPARPVAKKGVNSAVGSAMLPNNNKLDNKAQQVLPTENGSDSKSHLPKLVLKPLNGSAKPPIPGKDADKEQALAIRGQRSEAAIRWRPLKLVYDHDIRLAQMPVNCSFRVLRDIVSKRFPSSSSVLIKYKDCDGDLVTITSTDELRLAESSVDSHLLKELGEVKSDSVSMLRLHIVEVSPEQEPPLLEEEEEKLVENEGVKGDEGGSHSSLGESVSEVPDNEVDKVGKEAPKEKPGATGDTECKEVEMDDWLFEFAQLFRSHVGIDPDAHIDLHELGMELCSEALEETVTSEEAQELFDKAASKFQEVAALAFFNWGNVHMCAARKRIPLDESAGKEVVAEQLQVAYEWVKEKYSLAREKYEEALSIKSDFYEGLLALGQQQFEMAKLNWSFALAKKMDLSGWDSKETLNLFDSAEEKMKAATDMWEKLEEQRAKELKDPNATKKEELLRRRKKQVGATEGESSTVGGQGDISAEEAAEQAAVMRSQIHLFWGNMLFERSQVECKLGMNGWKENLDAATERFKLAGASEADISMVLKNHCSNGNAKDGDDKKVENTQHNKTIKPEINKANQV 778
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03257 778 ProSiteProfiles TPR repeat profile. 124 157 IPR019734 GO:0005515
Spst3g03257 778 ProSiteProfiles PB1 domain profile. 292 384 IPR000270 GO:0005515
Spst3g03257 778 PANTHER PROTEIN CLMP1 1 769 IPR044517 -
Spst3g03257 778 Gene3D Tetratricopeptide repeat domain 44 186 IPR011990 GO:0005515
Spst3g03257 778 MobiDBLite consensus disorder prediction 388 447 - -
Spst3g03257 778 SUPERFAMILY TPR-like 467 595 IPR011990 GO:0005515
Spst3g03257 778 SUPERFAMILY TPR-like 47 181 IPR011990 GO:0005515
Spst3g03257 778 MobiDBLite consensus disorder prediction 748 778 - -
Spst3g03257 778 SMART tpr_5 88 123 IPR019734 GO:0005515
Spst3g03257 778 SMART tpr_5 544 577 IPR019734 GO:0005515
Spst3g03257 778 SMART tpr_5 50 83 IPR019734 GO:0005515
Spst3g03257 778 SMART tpr_5 124 157 IPR019734 GO:0005515
Spst3g03257 778 MobiDBLite consensus disorder prediction 749 767 - -
Spst3g03257 778 MobiDBLite consensus disorder prediction 638 676 - -
Spst3g03257 778 Coils Coil 618 638 - -
Spst3g03257 778 MobiDBLite consensus disorder prediction 424 447 - -
Spst3g03257 778 MobiDBLite consensus disorder prediction 638 664 - -
Spst3g03257 778 ProSiteProfiles TPR repeat profile. 50 83 IPR019734 GO:0005515
Spst3g03257 778 Pfam PB1 domain 292 383 IPR000270 GO:0005515
Spst3g03257 778 SUPERFAMILY CAD & PB1 domains 286 360 - -
Spst3g03257 778 Gene3D - 294 365 - -
Spst3g03257 778 SMART PB1_new 292 384 IPR000270 GO:0005515
Spst3g03257 778 MobiDBLite consensus disorder prediction 1 30 - -
Spst3g03257 778 CDD PB1 295 366 - -
Spst3g03257 778 MobiDBLite consensus disorder prediction 10 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03257 Spst-Chr3 82543959 82546295 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03257 50 171 Calmodulin-binding Proteins AT3G25230 28.571 9.65e-10 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03257 K26538 - gmx:100786963 1324.69