Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03255 ATGAGTCAACTCGGTCTCATTTTACAGGATTCGCTCCGTCCAGAGAGAGAAGCAAGAACCATCCTGGGTCTGTTAACGGACCAAATGGATTCCGTCGATGGAGCTCAACGGAGGAGACGGACGCTCAAAGAACGTCTTCGATTCGCCGGAATCGGCTGTTGTGGGGCCACCTGGGTTTTCCGACCAACCCTCAGGGACGAAGGAGGAACACAACCACCACCACCACAACAACAACAACAAACAAACCGGGTTCAAGATCCGAACCCGAACAGAGCCGAATGCGAGGGCCCGAGCGGGTCGGGTTCGGGCATGAATCTTGCGGCGGCGCTAGCGGCGGAACGGCAGTTTCGGGAATCTGAAGAGGGGAGGGTGTCGTTGATGCGGCTGTTGGAGGAGACGGAGGGTGGTGGTGGGGATGGAGCGGTGGGGAATGATTCGGTGTGCTGCGTGTGCATGGGAAGGAAGAAAGGCGCGGCATTTATCCCGTGTGGGCACACTTTCTGTAGGGTTTGTTCGAGAGAAATGTGGTCGAACAGAGGTACCTGTCCCCTTTGTAACCGTTCCATTCTCGACATTCTCCACATCTTCTGA 591 0.5601 MSQLGLILQDSLRPEREARTILGLLTDQMDSVDGAQRRRRTLKERLRFAGIGCCGATWVFRPTLRDEGGTQPPPPQQQQQTNRVQDPNPNRAECEGPSGSGSGMNLAAALAAERQFRESEEGRVSLMRLLEETEGGGGDGAVGNDSVCCVCMGRKKGAAFIPCGHTFCRVCSREMWSNRGTCPLCNRSILDILHIF 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03255 196 MobiDBLite consensus disorder prediction 70 88 - -
Spst3g03255 196 SUPERFAMILY RING/U-box 143 192 - -
Spst3g03255 196 CDD RING-HC 148 185 - -
Spst3g03255 196 ProSiteProfiles Zinc finger RING-type profile. 148 186 IPR001841 -
Spst3g03255 196 PANTHER OS01G0917900 PROTEIN 5 196 - -
Spst3g03255 196 Pfam Zinc finger, C3HC4 type (RING finger) 145 191 - -
Spst3g03255 196 SMART ring_2 148 185 IPR001841 -
Spst3g03255 196 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 193 IPR013083 -
Spst3g03255 196 MobiDBLite consensus disorder prediction 64 99 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03255 Spst-Chr3 82525850 82526440 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03255 21 196 C3H Transcription Factor Family AT4G22250 53.535 1.03e-55 174
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03255 - - pvu:PHAVU_003G082200g 317.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03255 3 82525850 82526440 Spst6g01235 6 11378810 11379439 PCT