Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03254 ATGAAAGCTTCAAAGCAGCAGAAGCAGAATCAGCTCCAACAAAGAGGCTGCAAGGCCTTGTGTTGCAGTTGCAGGTTCAGTGTTTCATCTTCTGAAGAAGCAGAAAGCTCAGCCTCTGATAGATTCCCTTCTGTCTCAAGCCTTGCACATGCCATGGTGCAAGAGCGACTTGACCAGATGATTAGAGAAAGGATGGAAGCTAGGCATGTTGAGAGAAGAAGACAGCAGAGCAGAGAAGGAACCAAGTTTGTTGTAATGGTAGCAATGGAGAAGAGTTCTTATGATCCAAGAGAAGATTTTAGAGAGTCCATGATGGAGATGATAACTGCCAACCGCCTTTATGACGCCAAAGATCTTCGCAGTCTATTGAACTATTATATCTCCATGAACTCAGATGTGTACCATAGTCTAATCCTTGAGGTTTTTCACGAGGAGCAAGAAGAGGCCCAGGCAGAAGAGACATGGCGTGCTGGGTTGGTATTCCCTTGCTCAAACCAAGCAGAAAATTATCCAGAAATGGTTTGA 525 0.4476 MKASKQQKQNQLQQRGCKALCCSCRFSVSSSEEAESSASDRFPSVSSLAHAMVQERLDQMIRERMEARHVERRRQQSREGTKFVVMVAMEKSSYDPREDFRESMMEMITANRLYDAKDLRSLLNYYISMNSDVYHSLILEVFHEEQEEAQAEETWRAGLVFPCSNQAENYPEMV 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03254 174 ProSiteProfiles OVATE domain profile. 89 148 IPR006458 -
Spst3g03254 174 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 11 144 IPR038933 GO:0045892
Spst3g03254 174 Pfam Transcriptional repressor, ovate 93 144 IPR006458 -
Spst3g03254 174 NCBIfam uncharacterized plant-specific domain TIGR01568 87 144 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03254 Spst-Chr3 82520640 82521682 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Spst3g03254 Ovate 5.6e-18 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03254 - - var:108330150 236.113