Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03248 ATGGAGGGTGGTTCTAACGAGGCTTCCAGTGTGATGGGTTTTGGAGATAATACAAGTAGTAGTGGGGTTTGTCCTATGATGATGATGCCTTTAGTGACTTCTCATCATGGTGGTCATCATCCATTTAATCCTAATCTTAATAATCCCAATCCGAATCTTAATGAACACACAAACACAAACAGTCTCTTCCTTCCCATGCCTTGTGCTAATAATAATCACCACCCAAACCGCAATAGCATCCACGACAATAGCCACAACACCAACACCACTGAGTTAGGGTATTTCATGGAGATCCACAACCACAACACCGACAAAGATGGAAGCTCCTCCTCTTCTTCAGCAGTGAAGGCGAAGATCATGGCCCATCCTCACTATCACCGTCTCTTGGCAGCCTACGTCAATTGTCAAAAGGTTGGGGCGCCGCCTGAGGTGGTGGCAAGGCTAGAAGAAGCATGTGCATCTGCTGCGGTGAATATGGCGGGTGGAACTGCTAGCATCGGTGATGATCCGGCGCTGGACCAGTTCATGGAGGCGTACTGTGAGATGCTGATAAAGTACGAGCAAGAGCTCTCCAAACCCTTCAAGGAAGCGATGCTCTTCCTTCAGAGGATCGAGTGCCAGTTCAAATCTCTGACTATTTCTTCTTCCGACACTGCTTGTAATGAAGGTGCTGATAGGAATGGATCATCTGAAGATATTGATGTTCACAACAACATAATAGATCCACAGGCAGAAGACCAAGAACTGAAAGGTCAACTCTTGCGCAAGTACCGAGGATACCTAGGTAGTTTGAAGCAGGAGTTCACCAAGAAGAGAAAAAAGGGCAAGTTGCCCAAAGAAGCAAGGCAACAATTACTTGATTGGTGGAGCAGACACTACAAATGGCCTTACCCATCTGAATCTCAGAAGCTGGCTCTTGCAGAGTCAACAGGGCTGGATCAGAAGCAAATTAACAACTGGTTTATTAATCAAAGGAAACGGCACTGGAAGCCTTCAGAGGACATGCAATTCGTGGTGGTGGATCCAAGCCATCCACACTACTACATGGAAAATGTTCTGGGCAATCCCTTTCCCATGGATCTCTCCCACCACACAATGCTCTAA 1104 0.4665 MEGGSNEASSVMGFGDNTSSSGVCPMMMMPLVTSHHGGHHPFNPNLNNPNPNLNEHTNTNSLFLPMPCANNNHHPNRNSIHDNSHNTNTTELGYFMEIHNHNTDKDGSSSSSSAVKAKIMAHPHYHRLLAAYVNCQKVGAPPEVVARLEEACASAAVNMAGGTASIGDDPALDQFMEAYCEMLIKYEQELSKPFKEAMLFLQRIECQFKSLTISSSDTACNEGADRNGSSEDIDVHNNIIDPQAEDQELKGQLLRKYRGYLGSLKQEFTKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFVVVDPSHPHYYMENVLGNPFPMDLSHHTML 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03248 367 ProSiteProfiles 'Homeobox' domain profile. 268 331 IPR001356 GO:0003677
Spst3g03248 367 Gene3D - 273 335 - -
Spst3g03248 367 SMART KNOX1_2 113 157 IPR005540 GO:0003677|GO:0005634
Spst3g03248 367 FunFam Homeobox protein knotted-1-like 2 273 335 - -
Spst3g03248 367 Pfam KNOX1 domain 114 153 IPR005540 GO:0003677|GO:0005634
Spst3g03248 367 SMART KNOX2_2 162 213 IPR005541 GO:0003677|GO:0005634
Spst3g03248 367 Pfam Homeobox KN domain 288 327 IPR008422 GO:0003677|GO:0006355
Spst3g03248 367 ProSitePatterns 'Homeobox' domain signature. 306 329 IPR017970 GO:0000981|GO:0006355
Spst3g03248 367 CDD homeodomain 280 332 IPR001356 GO:0003677
Spst3g03248 367 SMART ELK_2 248 269 IPR005539 GO:0003677
Spst3g03248 367 ProSiteProfiles ELK domain profile. 248 268 IPR005539 GO:0003677
Spst3g03248 367 SUPERFAMILY Homeodomain-like 270 346 IPR009057 -
Spst3g03248 367 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 69 337 - -
Spst3g03248 367 Pfam KNOX2 domain 165 212 IPR005541 GO:0003677|GO:0005634
Spst3g03248 367 SMART HOX_1 270 335 IPR001356 GO:0003677
Spst3g03248 367 Pfam ELK domain 248 268 IPR005539 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03248 Spst-Chr3 82470033 82474339 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03248 95 367 Homeobox Transcription Factor Family AT1G62360 75.958 8.09e-134 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Spst3g03248 KNOX2 3.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03248 - - gmx:100127401 602.823
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03248 3 82470033 82474339 Spst6g01226 6 11296319 11303625 PCT