Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03244 ATGGAGGTTGTAGTCCCAAGAAAAGAACAGTCAAAAACTCAGCAAACTGAGGATAGACTGGAATTGTCCAGATGCTCAAAAGTTTACGGAACTTTGAAGAGAAAAGCAGAAGAAATCCCCGAGCATGGTGATAAGAACTCCAAACTAAAAGGGGAAGAAGCTATGATCTATTTAAACAAGAATAATGAAGTAAGAGTGCCTAAAAAGAAGAGAGGGGTTCGAGAAATCTGTAAGTTTGATAATACAAAACCAAAAACGAAAGGAAAAACTTGTTCACTGAGGACAACAAAACTACCGTGCAAGAGAAGAGATGAGACACAAAAGCTAACTGTCTCAAACAAGAAAAGGAAATATGAAGATGACCTCTTGAATGATGATTTAGAAGATGAAGAAATGCTTATTCTTTTAAAGGCAAAGACCAGGAGCAGAGCTAGAAGAATGAATAATGTGAAGGATGTTGAACAAAAGCCCAGAAATTGTCATCAATGCATGAAAAAGGGGAGAACAATTTTTGTGCCTTGTACTAAATGCCCGAACATGTACTGTATGCAATGTGTTGATAAATGGTACCCTGATATGTCAGTAGAAGAAATTGCAGTAAGTTGTCCGTTTTGCCGGAAAAATTGCAATTGCAATGTTTGCTTGTGTTCAAGAGGAATGATTAAGACATCTAACAGGGACATGACTGACTATGAAAAAGCTCATTATCTGCATTATATGATTAACTTACTCCTACCATATTTGAAACAAATTTGTCATGAACAAAGTGAAGAGAAGCAGATTGAAGCTACAATACTAGGAAAATCTTCTTTTGAGAAGGAAATACCCCAAAGTTTTTGTGGCAACTACGAACGTGTCTATTGTGATCATTGTGCTACTTCAATTATTGACCTTTATCGAAGCTGCCCAAATTGTTCCTATGAACTCTGCCTTAGTTGTTGTCAAGAAATACGTGATGGAAGCATTTCACCCCGGGTCGAGCAGAAGTTCGCATATGTGAATAGGGGCTACGATTATATGCATGGTGGGGATCCTCTACCTGAGTCTAGCGATTTAGGGGCATCAGAATGTCATACCAAGCTATCTATTGTGTGGAATGCTAAGAGTGATGGAAGCATTAGATGTGCACCAAAGGAGTTGGGGGGTTGTGGTAGGGCTGTATTGGAGCTGAGACGTGTCCTCTCAAGTGGGTGGATATCTGAGTTGGAAGTCAAAGCTCGCAATATGCTGAAAATTTGGGAAAATGAACATACAACTCTTCAGCAAGAAGAAGCTGTATCAAGCTACACCTCGTCGAGAAAGGAAGCTATCAGAGAAGATATAAATGATAATACCATGGACTGTTCAGAGTCAAGTAACATCCTAAAAGAAAGGTTGTTACTTTTCCAAAAGCATTGGTCCAATGGTGAACCAATTATAGTTCGTGATGCCCTTAAACAGGGGACTGGTCTGAGCTGGAAGCCGATGGTAATGTGGCGAGCCTTATGTAAAAATATGGTTTCAGAAGTCAGTTCAAACATGTCAGAAGTGAAAGCCATTGATTGCCTGGCTAATTGTGAGAATGCCAATAGAATGCTTTTATACTCCCTAGTATCATTTAGTGCATCATGTATAAGGCATGCCCGATTAGCTTTAGATTCCTCATATTGTAGAGCTTCAACTGCCATCTTAGTATTTCATCTTCCAAATTCCAGTGTAATAGTTTTAGCTTGTATCTCGTGCACCATACAATATTATTTAAGTATTCACACTACTAAATTTAAGCAGGTAGAAATCGATACTCGAACATTTTTCAAAGGTTATATAGAGGGAAGAACATACAGAAATCTCTGGCCAGAGATGCTTAAGCTAAAAGACTGGCCCCCCTCTGATAAATTTGAAGATCTTTTGCCTCGCCATTGTGACGAGTTTATTCGCTCCTTGCCATTTCAAGAGTACAGCGATCCTCGGACTGGAATTCTCAATCTTGCTGTGAAGTTGCCAGACCATGTCCTAAAACCTGACATGGGTCCGAAAACATATATTGCCTATGGGATTAAAGAAGAGCTTGGTAGAGGAGACTCTGTAACAAAGCTTCATTGTGATATGTCAGACGCGGTGAATATTTTGACCCATACAGCAGAAGTGATGTTAACTGACGAGCAGCAATTAATTATTTCTAAGTTGAAAGAAGCACACAAGATACAAGATGAGAGAGAACAGTGTGCTGAAGGAAGGGTTACTGACAGCCCGAATAGCCGACCTCTCAAAGACAACGAAGTACGGATAGGAAATAAGGTAGTTTTAGAATTCAAAGACAGAGAGAAGCGCCCTATTGAAATTAATGGAAGGATCTTTCCAAATGATGTACCTGAGGGGGTCACTTCTGCTACAGAGATTGAATCAATGGAAACAGGCAGTGCTCTATGGGATATCTTTCCGAGGGAAGATTCTGAGAAGTTAGAAACATATCTTAGGAAACACTCAAAAGAATTCAGACATACTTATTGTTCTCCTATTGAACAGGTTGTACATCCAATTCATGACCAATGTTTTTATTTGACATCGGAGCACAAGAAGAAGCTGAAGGAGGAGTTCGGTGTAGAACCGTGGAGTTTTGAGCAAAAACTTGGGGAGGCAGTATTTATTCCTGCTGGATGTCCACATCAAGTCAGGAATCTCAAGTCATGCACAAAAGTTGCTGTAGATTTTGTGTCCCCCGAAAATATCCACGAGTGTCTGCGTTTAACTAATGAGTTCCGCCAGCTTCCCAAGAACCACAGGGCTAGAGAAGATAAGCTTGAGATAAAGAAGATGATAGTTTATGCCATTGATGAAGCTGTCACAGACTTACAAGCTTTACTGAAGTGTTCTTGA 2856 0.3981 MEVVVPRKEQSKTQQTEDRLELSRCSKVYGTLKRKAEEIPEHGDKNSKLKGEEAMIYLNKNNEVRVPKKKRGVREICKFDNTKPKTKGKTCSLRTTKLPCKRRDETQKLTVSNKKRKYEDDLLNDDLEDEEMLILLKAKTRSRARRMNNVKDVEQKPRNCHQCMKKGRTIFVPCTKCPNMYCMQCVDKWYPDMSVEEIAVSCPFCRKNCNCNVCLCSRGMIKTSNRDMTDYEKAHYLHYMINLLLPYLKQICHEQSEEKQIEATILGKSSFEKEIPQSFCGNYERVYCDHCATSIIDLYRSCPNCSYELCLSCCQEIRDGSISPRVEQKFAYVNRGYDYMHGGDPLPESSDLGASECHTKLSIVWNAKSDGSIRCAPKELGGCGRAVLELRRVLSSGWISELEVKARNMLKIWENEHTTLQQEEAVSSYTSSRKEAIREDINDNTMDCSESSNILKERLLLFQKHWSNGEPIIVRDALKQGTGLSWKPMVMWRALCKNMVSEVSSNMSEVKAIDCLANCENANRMLLYSLVSFSASCIRHARLALDSSYCRASTAILVFHLPNSSVIVLACISCTIQYYLSIHTTKFKQVEIDTRTFFKGYIEGRTYRNLWPEMLKLKDWPPSDKFEDLLPRHCDEFIRSLPFQEYSDPRTGILNLAVKLPDHVLKPDMGPKTYIAYGIKEELGRGDSVTKLHCDMSDAVNILTHTAEVMLTDEQQLIISKLKEAHKIQDEREQCAEGRVTDSPNSRPLKDNEVRIGNKVVLEFKDREKRPIEINGRIFPNDVPEGVTSATEIESMETGSALWDIFPREDSEKLETYLRKHSKEFRHTYCSPIEQVVHPIHDQCFYLTSEHKKKLKEEFGVEPWSFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENIHECLRLTNEFRQLPKNHRAREDKLEIKKMIVYAIDEAVTDLQALLKCS 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03244 951 SUPERFAMILY Clavaminate synthase-like 463 947 - -
Spst3g03244 951 Pfam JmjC domain, hydroxylase 789 897 IPR003347 -
Spst3g03244 951 CDD cupin_RmlC-like 838 898 - -
Spst3g03244 951 Gene3D Cupin 438 536 - -
Spst3g03244 951 FunFam Transcription factor jumonji (JmjC) domain-containing protein 723 923 - -
Spst3g03244 951 ProSiteProfiles Zinc finger RING-type profile. 160 206 IPR001841 -
Spst3g03244 951 ProSiteProfiles JmjC domain profile. 649 914 IPR003347 -
Spst3g03244 951 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 589 948 IPR045109 GO:0032454|GO:0033169
Spst3g03244 951 SMART cupin_9 630 914 IPR003347 -
Spst3g03244 951 Gene3D Cupin 561 923 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03244 Spst-Chr3 82410099 82414483 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Spst3g03244 JmjC 5e-16 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03244 K15601 K21989 qsa:O6P43_011951 875.93
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03244 3 82410099 82414483 Spst3g03244 3 82410099 82414483 ECH
Spst3g03244 3 82410099 82414483 Spst6g01219 6 11234182 11248991 PCT