Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03239 ATGCTTGCATTAACAAGCACGGTGATCATGTCAACTTCACTCCTATTGCTTTCATGCTTCATGCTACACCTTGCTTCTACATATGTTATTGCTCATTCAGCTGAGAACAACTACTTCTACAACAACAACAACAACTACAACAACACTCCCCTACCTGTCTCAAAGTATATCCCTAAGAAACCATTGCTCAATGTCATAGACTCTTGCTGGAGGGCCAAACCAAGATGGACCTCAAATCGCCAAGCCTTGGCTGATTGTGCAATTGGCTTTGGCAAAGATGCCACAGGAGGCAAATATGGTGCAATATACCAAGTCTCAGACCCCTCTGATGACCCTGTAAACCCAAAACTGGGCACCCTTCGTTATGGTGCAATCCAAAGTGAACCACTCTGGATCATTTTTGACAAAGACATGATCATTACACTAAAAAATGAGCTTATTATGAATAGTTACAAGACCATTGATGGAAGAGGAGCAAAAGTGGAGATTGCTGATGGACCTTGCATTACAATACAAAGTGTTAGTCATGTTATTATACATGGCATTAGCATCCATGATTGCAAACCAGCCAAACCTGGTCTTGTGAGGAGCACTCCTGACCATGTTGGCCATCGTCTAGGCTCAGATGGAGATGCCATTAGCATATTTTCTTCCACCAATATTTGGATTGATCATTGTTTTTTGGCTCGTTCCACCGATGGTCTGATCGATGTTATTCGTGCCTCAACTGCCATTACCATATCTAACAATTACTTTACTCAGCATGACAAAGTTATGTTGCTAGGACATAATGACCAATTCACAAGAGATAAAATAATGAAAGTAACAATAGCCTTCAACCAGTTTGCTAGTGGCCTAACTGAAAGGATGCCAAGGGTAAGATTTGGTTACGCCCATGTGGTCAACAACAAATATGATGAGTGGAAAATGTATGCTATTGGAGGTAGTGCTAACCCAACCATTTTAAGTGAAGGGAATTTTTATGTAGCACCAAATGACCCAAGTGCAAAACAGGTTACCAAGAGGAAAGTGAAGGAAAACTGGAAGAGTTGGAAATGGAGATCTTCCAAGGACTTATTTTTAAATGATGCTTATTTTGTACCATCTGGATTTGGAAGCAGTGCTCCAAATTACTCACCTTCTCAATCTTTTAGTGCTGCTCCGGCATACATGGTACCTGCAATAACTCTCAATGCAGGTCCAATAAATTGTATTGCTGGGAGAGCATGTTAG 1233 0.4104 MLALTSTVIMSTSLLLLSCFMLHLASTYVIAHSAENNYFYNNNNNYNNTPLPVSKYIPKKPLLNVIDSCWRAKPRWTSNRQALADCAIGFGKDATGGKYGAIYQVSDPSDDPVNPKLGTLRYGAIQSEPLWIIFDKDMIITLKNELIMNSYKTIDGRGAKVEIADGPCITIQSVSHVIIHGISIHDCKPAKPGLVRSTPDHVGHRLGSDGDAISIFSSTNIWIDHCFLARSTDGLIDVIRASTAITISNNYFTQHDKVMLLGHNDQFTRDKIMKVTIAFNQFASGLTERMPRVRFGYAHVVNNKYDEWKMYAIGGSANPTILSEGNFYVAPNDPSAKQVTKRKVKENWKSWKWRSSKDLFLNDAYFVPSGFGSSAPNYSPSQSFSAAPAYMVPAITLNAGPINCIAGRAC 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03239 410 Pfam Pectate lyase 145 328 IPR002022 -
Spst3g03239 410 SMART amb_all 137 334 IPR002022 -
Spst3g03239 410 SUPERFAMILY Pectin lyase-like 84 409 IPR011050 -
Spst3g03239 410 PANTHER PECTATE LYASE 18-RELATED 45 408 IPR045032 GO:0030570
Spst3g03239 410 PRINTS Pollen allergen Amb family signature 209 230 IPR018082 -
Spst3g03239 410 PRINTS Pollen allergen Amb family signature 86 103 IPR018082 -
Spst3g03239 410 PRINTS Pollen allergen Amb family signature 109 134 IPR018082 -
Spst3g03239 410 PRINTS Pollen allergen Amb family signature 311 330 IPR018082 -
Spst3g03239 410 PRINTS Pollen allergen Amb family signature 351 375 IPR018082 -
Spst3g03239 410 PRINTS Pollen allergen Amb family signature 145 161 IPR018082 -
Spst3g03239 410 PRINTS Pollen allergen Amb family signature 289 308 IPR018082 -
Spst3g03239 410 PRINTS Pollen allergen Amb family signature 381 404 IPR018082 -
Spst3g03239 410 Gene3D - 63 403 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03239 Spst-Chr3 82379010 82381189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03239 56 410 Polysaccharide Lyase AT1G11920 69.382 0.0 527
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03239 K01728 - gmx:100807483 707.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03239 3 82379010 82381189 Spst3g03239 3 82379010 82381189 ECH