Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03202 ATGATGCAGCCAGGACCCGGCATGGCCCAACAACCCAACCAGCAATACCCACAACAACAGCAGCAGCAACAACCCTATATGATGATGCAGCCGCAGCCGCAGCCGCAGCCCCCTCAGATGTGGGCCCCAACGGCCCAGGCTCCGCCGCAATCGGTGGCTCCTCCGCAGCCGACTAGCGCCGATGAGGTCCGTACTCTCTGGATCGGCGATTTGCAGTACTGGATGGACGAAAACTACCTCTATACGTGTTTCGCTCACACCGGCGAGGTGGCTTCGGTTAAAGTCATTCGGAACAAACAAACTAGTCAATCGGAGGGATATGGGTTTATTGAGTTTACCAGTCGTGCTGGTGCTGAGAGAATCCTTCAAACATACAATGGAACCATTATGCCAAATGGTGGCCAAAACTTCAGATTGAACTGGGCTTCTTTTAGTGCGGGAGATAGGCGTCACGATGACAGCCCGGATCACACCATATTTGTTGGAGACTTGGCTGCAGATGTTACAGATTATCTTCTTCAAGAGACATTTCGGGCACGGTATCCCTCAGTTAAGGGTGCCAAAGTTGTAATTGATAGGCTCACTGGCCGGACAAAGGGTTATGGTTTTGTTAGGTTTGGAGATGAGAGTGAACAGGTTAGAGCTATGACTGAAATGCAAGGGGTTCTTTGTTCAACAAGGCCGATGCGAATTGGACCTGCATCTAATAAAAACCCTAGCACTCAGTCCCAGCCAAAAGCATCATATCAGAATCCTCAAGGGGCACAGAACGAGCATGATCCAAATAATACAACTATTTTTGTGGGCAATTTGGATCCTAATGTGACCGATGACCATTTGAGACAAGTTTTTGGGCAGTATGGAGAGTTAGTGCACGTGAAGATTCCAGCTGGCAAGAGATGTGGATTTGTCCAATTTGCCGACAGGAGCTGTGCAGAAGAGGCACTGCGGGTTTTAAACGGTACACTTTTGGGTGGACAAAATGTTCGGCTTTCATGGGGCAGAAGTCCTTCAAACAAACAGGCCCAACCAGATGCAAACCAGTGGAATGGTAGTGGTGGTTACTATGGATATGCTGCTCAGGGTTATGAAAATTATGGTTATGCTCCTGCTGGACAGGACCCCAATATGTATGGCAGTTATCCGGGCTATGCAAATTACCAACCTCCCCAGCAACAACAGCAAATAGGATATAGCTAA 1200 0.4875 MMQPGPGMAQQPNQQYPQQQQQQQPYMMMQPQPQPQPPQMWAPTAQAPPQSVAPPQPTSADEVRTLWIGDLQYWMDENYLYTCFAHTGEVASVKVIRNKQTSQSEGYGFIEFTSRAGAERILQTYNGTIMPNGGQNFRLNWASFSAGDRRHDDSPDHTIFVGDLAADVTDYLLQETFRARYPSVKGAKVVIDRLTGRTKGYGFVRFGDESEQVRAMTEMQGVLCSTRPMRIGPASNKNPSTQSQPKASYQNPQGAQNEHDPNNTTIFVGNLDPNVTDDHLRQVFGQYGELVHVKIPAGKRCGFVQFADRSCAEEALRVLNGTLLGGQNVRLSWGRSPSNKQAQPDANQWNGSGGYYGYAAQGYENYGYAPAGQDPNMYGSYPGYANYQPPQQQQQIGYS 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03202 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 266 329 IPR000504 GO:0003723
Spst3g03202 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 159 222 IPR000504 GO:0003723
Spst3g03202 399 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 66 131 IPR000504 GO:0003723
Spst3g03202 399 MobiDBLite consensus disorder prediction 228 263 - -
Spst3g03202 399 MobiDBLite consensus disorder prediction 1 59 - -
Spst3g03202 399 SMART rrm1_1 65 140 IPR000504 GO:0003723
Spst3g03202 399 SMART rrm1_1 158 232 IPR000504 GO:0003723
Spst3g03202 399 SMART rrm1_1 265 332 IPR000504 GO:0003723
Spst3g03202 399 MobiDBLite consensus disorder prediction 1 29 - -
Spst3g03202 399 FunFam Polyadenylate-binding protein RBP45C 149 241 - -
Spst3g03202 399 Gene3D - 148 243 IPR012677 -
Spst3g03202 399 MobiDBLite consensus disorder prediction 231 263 - -
Spst3g03202 399 FunFam Polyadenylate-binding protein RBP45 5 148 - -
Spst3g03202 399 CDD RRM2_SECp43_like 156 235 - -
Spst3g03202 399 CDD RRM1_SECp43_like 65 145 - -
Spst3g03202 399 MobiDBLite consensus disorder prediction 379 399 - -
Spst3g03202 399 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 55 340 - -
Spst3g03202 399 MobiDBLite consensus disorder prediction 385 399 - -
Spst3g03202 399 SUPERFAMILY RNA-binding domain, RBD 248 362 IPR035979 GO:0003676
Spst3g03202 399 SUPERFAMILY RNA-binding domain, RBD 26 144 IPR035979 GO:0003676
Spst3g03202 399 Gene3D - 244 370 IPR012677 -
Spst3g03202 399 Gene3D - 6 147 IPR012677 -
Spst3g03202 399 MobiDBLite consensus disorder prediction 30 55 - -
Spst3g03202 399 SUPERFAMILY RNA-binding domain, RBD 141 243 IPR035979 GO:0003676
Spst3g03202 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 64 144 IPR000504 GO:0003723
Spst3g03202 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 264 336 IPR000504 GO:0003723
Spst3g03202 399 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 157 236 IPR000504 GO:0003723
Spst3g03202 399 FunFam Polyadenylate-binding protein RBP45C 242 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03202 Spst-Chr3 82066357 82070177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03202 158 329 Eukaryotic Initiation Factors Gene Family AT4G34110 30.508 1.73e-16 79.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03202 - - gmx:100814743 677.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03202 3 82066357 82070177 Spst6g01170 6 10733384 10737045 PCT