Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03186 ATGGACACCAGCACGGTCTCACTGTTGTCGCCTCTTCCCACTTTGCGTCTTCTTTCATCTGAAAAACTAACTCCCACTTGTCGCATTCTTCCTTCTCACAACCATTTTCTCAGACACTTCTCCTACCCTACTAACTTTAATCGGACCTCAAAATTCAGAACTACACAAGCCCTTCTCAATTCCTCTCCCATAACCCCTACAGCGGTCACCACTCCCACTCTCAGAGAAATATGCCAAGCTCACGTTCCTGAACATATATTGCAAAGGCAGATGGAAGAGATTGGGTATGTAGTGCCCACGGATATCCAGAGGGAGGCTTTGCCTTATCTTTTTTCTGGGCTTGATTGCATTCTCCATGCTCAGACAGGTTCTGGGAAGACACTCACATACCTGCTTTTGATCCACTCCATCGTCAATGCTGCAAAATCCTCTGTGCAAGCTCTTGTTGTGGTGCCCACCCGGGAACTCGGAATGCAAGTCACTAAGGTCGCTAGGACATTGGCTGCAAAGCCAACTGGAGTCGTTGGGGAGCACAAGTCATGTTCCATCATGGCTCTGCTAGATGGAGGAACACTGAAAAGACACAAGACTTGGTTAAAGGCAGAGCCACCAACAATAGTGGTTGCAACAGTTGGGAGTTTATGCCAAATGCTTGAAAGACATTTTTTTTCGCTTGAAACTGTGCGGGTGCTGATTGTTGATGAGGTTGACTGTATTTTCAACTCTTCAAAGCAAGTGAGTTCCCTTCGAAAGATTTTGACTTCACATTCATCTTGCAATAACCGTCAGACAGTCTTTGCCAGTGCATCTATACCACAGCACAACCGATTTATTCATGACTCTGTGCAGCAAAAATGGACAAAGAGAGATGTGGTCCATATTCATGTCAGTGCAGTGGAGCCCATGCCATCTCGCATTTATCATAGATTTATAAGATGTGAAACCAAAAGAAAATTACAAATCCTGTTATCCTTGATACAGTCCGATGCACCTGAGTCTGGCATTATATTTGTTACTGAGCAGTCCGAGAAGTCCAAAAAGGCTGGAAAAACTCCATCAACATCCCTTCTGATTGACTTTTTGAAGATATCATACCGGGGTGATTTAGATGTCCTCCTCCTTGAAGACAAAATGAATTTCAATTCACGAGCAGCTTCACTGTTGGAGGTTAGAAAAGGAGGTGGCTATCTTCTTGTAGCAACAGATATAGCTGCTAGGGGAGTTGACCTTCCAGAAATGTCTCACATTTACAACTTTGATCTGCCAAGGACTGCTATAGATTATCTTCATCGAGCTGGCCGAACATGTAGAAAACCCTTTTCTGACATCAATTGTACTGTTACCAGCATTATTGTTCCAGATGAGCGATTTGTTCTGCAGAGATATGAAAATGAGTTGATGTTTGAGTGTGAAGAGTTTATTATTCCATAA 1431 0.4354 MDTSTVSLLSPLPTLRLLSSEKLTPTCRILPSHNHFLRHFSYPTNFNRTSKFRTTQALLNSSPITPTAVTTPTLREICQAHVPEHILQRQMEEIGYVVPTDIQREALPYLFSGLDCILHAQTGSGKTLTYLLLIHSIVNAAKSSVQALVVVPTRELGMQVTKVARTLAAKPTGVVGEHKSCSIMALLDGGTLKRHKTWLKAEPPTIVVATVGSLCQMLERHFFSLETVRVLIVDEVDCIFNSSKQVSSLRKILTSHSSCNNRQTVFASASIPQHNRFIHDSVQQKWTKRDVVHIHVSAVEPMPSRIYHRFIRCETKRKLQILLSLIQSDAPESGIIFVTEQSEKSKKAGKTPSTSLLIDFLKISYRGDLDVLLLEDKMNFNSRAASLLEVRKGGGYLLVATDIAARGVDLPEMSHIYNFDLPRTAIDYLHRAGRTCRKPFSDINCTVTSIIVPDERFVLQRYENELMFECEEFIIP 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03186 476 SMART ultradead3 95 309 IPR014001 -
Spst3g03186 476 CDD SF2_C_DEAD 308 437 - -
Spst3g03186 476 CDD DEADc 87 273 - -
Spst3g03186 476 Gene3D - 45 288 IPR027417 -
Spst3g03186 476 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 107 289 IPR014001 -
Spst3g03186 476 SMART helicmild6 355 439 IPR001650 -
Spst3g03186 476 Pfam DEAD/DEAH box helicase 100 273 IPR011545 GO:0003676|GO:0005524
Spst3g03186 476 Gene3D - 302 473 IPR027417 -
Spst3g03186 476 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 318 476 IPR001650 -
Spst3g03186 476 Pfam Helicase conserved C-terminal domain 318 437 IPR001650 -
Spst3g03186 476 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 47, MITOCHONDRIAL 82 466 - -
Spst3g03186 476 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 108 441 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03186 Spst-Chr3 81898471 81907421 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03186 76 464 Eukaryotic Initiation Factors Gene Family AT1G72730 27.638 1.30e-29 118
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03186 - - gmx:100786205 820.076