Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03170 ATGGGAGTTTCATGGAGTAACAATAACAGAAGAAGAAGAAGAAGAAACACTTACTTTCATCCTCATCCTCATCCACCACATCTCCCACCCCCTTACTATTACCCTCCGCCGCTTCTGCCACCACCACCACAAGGTTACTTTATTACCTCAACCAACCCTTCTGCTTCTACTTCTACCACCACCAGCTATGTGGGTCCTCCTCCTCAGTATTACCCAAATGGCTACACTGCCAATTCTGTGATGCTTCATCAGCAGCCCTTGTATGCAAATGAGGGGGGAAGTGAAATTCATGCTTCTCCACCACCCTATATTGATCATCAAACCACTAAGAAGATAAGGAACGACGTCAATTTGCATAAACACACTTTACGCCTCTATGTAGATACTAACAATCCAGATCACCACTTGATTTCCTTTGATTTCGATGCCCTCTATGATGGCAGCATTACTATCTTCTACTTAGCCAAAGAAGAAGAAAAATGTAGGTTTATTCCACTATTTCCTGATATGTTTGAGCCAATCACATTCCCCTTTCAAAAAGGAGCTGGCCAGAAATTTTGTCAGCCTTCAGGAACAGGCATTGACCTAGGCTTTTTTGAGTTGGATGATCTTTCTCGACCCTCACCCGGAGAAGATGTATTTCCCCTTGTCATATGTGCTGAAACTAATAGTTCTGTATTAGGTGCATCCCCTCACATGCAAATAACTCAAGCTGTCTTAGAGAAAAGCAATAGTATTGGTCCTTTCCAGGTAAAAGTAGTTAGGCAGATTCTGTGGATTGATGATGTCCGTTATGAGCTCAGAGAGTTATATGGAATAGGAAGTTCAGAAACACCAGATTTTGATGATAATGATCTAGGAAAGGAGTGTGTAATATGCATGACTGAACTCAAGGACACTGCTGTCTTACCCTGCCGACATATGTGTATGTGCAGTGAGTGTGCTAAAGCTTTGCGGTTTCAATCAAATAAGTGTCCTATATGCCGTCAACCTATCGAGGAACTTATAGAGATCAAGATAAACAATGGCAATCAATGA 1038 0.42 MGVSWSNNNRRRRRRNTYFHPHPHPPHLPPPYYYPPPLLPPPPQGYFITSTNPSASTSTTTSYVGPPPQYYPNGYTANSVMLHQQPLYANEGGSEIHASPPPYIDHQTTKKIRNDVNLHKHTLRLYVDTNNPDHHLISFDFDALYDGSITIFYLAKEEEKCRFIPLFPDMFEPITFPFQKGAGQKFCQPSGTGIDLGFFELDDLSRPSPGEDVFPLVICAETNSSVLGASPHMQITQAVLEKSNSIGPFQVKVVRQILWIDDVRYELRELYGIGSSETPDFDDNDLGKECVICMTELKDTAVLPCRHMCMCSECAKALRFQSNKCPICRQPIEELIEIKINNGNQ 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03170 345 MobiDBLite consensus disorder prediction 1 26 - -
Spst3g03170 345 ProSiteProfiles Zinc finger RING-type profile. 290 329 IPR001841 -
Spst3g03170 345 SUPERFAMILY RING/U-box 289 335 - -
Spst3g03170 345 Pfam Zinc finger, C3HC4 type (RING finger) 288 334 - -
Spst3g03170 345 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 276 339 IPR013083 -
Spst3g03170 345 SMART ring_2 290 328 IPR001841 -
Spst3g03170 345 PANTHER MAHOGUNIN 44 339 IPR045194 GO:0061630
Spst3g03170 345 FunFam probable E3 ubiquitin-protein ligase LOG2 274 339 - -
Spst3g03170 345 CDD mRING-HC-C3HC5_MGRN1-like 288 329 IPR045195 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03170 Spst-Chr3 81737093 81739087 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03170 103 345 C3H Transcription Factor Family AT3G06140 63.306 4.38e-106 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03170 - - gmx:102665712 529.635