Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03163 ATGGCAAAACAGATAGTGCTATTTACATGTCCACCTCCAGATGTATCGCTTCGCCGAGTCAGAATTTCGAAGCAATCGATGTGGGTCACGAAATGTGCTGCCGTTTCTTCACCATCATTTTCTATCTCAGCTCCTCTTCGCTACGCGTCGATTTGCTGCAGCTCTCTCGCTACCGCTTCTATCGAATCCAATGCCTCTTCGGCCAAAGTCTTCGTCAAGGGGCTACCGCTCTCAACCTCTGAAGGAAGACTAATGAAGGTGTTTTCAGAGTTTGGCGAAGTTAATCTAGTGCAGCTTCCTATAGATGAAGAATCTGGACAGTCTTTAGGATTTGCATTTATTTGGTTTGTAAAGGAAGAGTATGCACAAGTGGCTGTGCAAGAGATGAATGGAAAGTTTTTTGATGGCAGGTTTATTTATGTTGCAATTGCAAAGCCTGGATCATCAAAAGATTCGAAGAGGACAACAGCCTACAAATTTTAA 483 0.4348 MAKQIVLFTCPPPDVSLRRVRISKQSMWVTKCAAVSSPSFSISAPLRYASICCSSLATASIESNASSAKVFVKGLPLSTSEGRLMKVFSEFGEVNLVQLPIDEESGQSLGFAFIWFVKEEYAQVAVQEMNGKFFDGRFIYVAIAKPGSSKDSKRTTAYKF 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03163 160 PANTHER RNA-BINDING MOTIF PROTEIN, X-LINKED 2 63 154 - -
Spst3g03163 160 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 68 146 IPR000504 GO:0003723
Spst3g03163 160 Gene3D - 57 159 IPR012677 -
Spst3g03163 160 SMART rrm1_1 69 142 IPR000504 GO:0003723
Spst3g03163 160 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 70 139 IPR000504 GO:0003723
Spst3g03163 160 SUPERFAMILY RNA-binding domain, RBD 65 149 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03163 Spst-Chr3 81628786 81631170 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03163 70 146 Eukaryotic Initiation Factors Gene Family AT3G11400 40.260 2.80e-11 58.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03163 - - gmx:100791917 196.438
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03163 3 81628786 81631170 Spst3g03163 3 81628786 81631170 ECH