Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03135 ATGGCCTCTCCTACTCCTCCCCCCGACCCCCCCACCGCCGTCCCCCTCGCTCTCCTCCCTCTCCCCGCGCCCCCCTCCTCCCGCCGCCTCCCTCCACCCTGCTGGTCCCCCGATGAAACCCTCGCCCTCATCGACGCCTACCGTGACAAGTGGTACTCCCTCGGCCGCGGCAACCTCAAGGCCACCCACTGGCAAGAGGTTGCCGACGCCGTCGCCAACCGCTGCCCCAACGCCTCCCCTCCCAAAACCCCCGTCCAGTGCCGCCACAAAATGGAGAAGCTCCGCAAGCGCTACCGCACTGAGATCCAACGCGCTCGCTCCCTCCCCGTTTCCCGATTCAATTCCTCATGGGTCCACTTTAAGCTCATGGACTCCATGGAGAAAGGCCCCTCTCCTGTCAAACCCGAACACGATTCCGACAGTGATAATGATGATGACGACAACGACGATGATCAAGATCTGTACCAGGAGATTAACCACAACGGCCACACCCGGAGCTTGAACAAGTTGTACAGGAACGGGTTTCCGGGTGCCGGTGCCGGTGCCGGTGGATTTAGGATTCGAATTCCCACCGGAATGGGCGCGGCTCAACCTGGATCTGGCTCCAAGGTTTTTGGGAAGGTTGGGAATAAAAAATTCAGCCCTAATTTGAATCAAAACCCTAACCCTAATTTCGGGAAGAAGAGGGAGAGAGATCCTCTGGGGGAGGTGGTGACTGCGATTAAGGTTTTGGGAGATGGGTTTGTGAGAATGGAACAGATGAAGATGGAGATGGCGAGGGAGATTGAGAGCATGCGGATGGAGATGGAAATGAAGCGCACGGAGATGATTCTGGAGTCGCAACAACGGATCGTTGAGGCCTTTGCCAAGGCCGTTTCAGAAAAGAAGAAGAAGGTCAAGACTGTGCCTTCGCCCCAGCAGCCCTAA 927 0.5761 MASPTPPPDPPTAVPLALLPLPAPPSSRRLPPPCWSPDETLALIDAYRDKWYSLGRGNLKATHWQEVADAVANRCPNASPPKTPVQCRHKMEKLRKRYRTEIQRARSLPVSRFNSSWVHFKLMDSMEKGPSPVKPEHDSDSDNDDDDNDDDQDLYQEINHNGHTRSLNKLYRNGFPGAGAGAGGFRIRIPTGMGAAQPGSGSKVFGKVGNKKFSPNLNQNPNPNFGKKRERDPLGEVVTAIKVLGDGFVRMEQMKMEMAREIESMRMEMEMKRTEMILESQQRIVEAFAKAVSEKKKKVKTVPSPQQP 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03135 308 FunFam Trihelix transcription factor ASIL2 35 100 - -
Spst3g03135 308 Gene3D - 35 100 - -
Spst3g03135 308 SMART 118neu2 42 131 IPR006578 -
Spst3g03135 308 ProSiteProfiles Myb-like domain profile. 35 95 IPR001005 -
Spst3g03135 308 MobiDBLite consensus disorder prediction 1 32 - -
Spst3g03135 308 MobiDBLite consensus disorder prediction 210 230 - -
Spst3g03135 308 Coils Coil 255 275 - -
Spst3g03135 308 Coils Coil 88 108 - -
Spst3g03135 308 Pfam Myb/SANT-like DNA-binding domain 33 126 IPR044822 -
Spst3g03135 308 PANTHER TRIHELIX TRANSCRIPTION FACTOR ASIL2 13 294 IPR044823 -
Spst3g03135 308 MobiDBLite consensus disorder prediction 126 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03135 Spst-Chr3 81299798 81300724 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03135 3 126 Trihelix Transcription Factor Family AT3G14180 35.036 4.56e-19 85.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Spst3g03135 Myb_DNA-bind_4 2e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03135 - - vun:114179736 458.373