Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03098 ATGGAGACTGTCATCAATCAACATGGTCTTGATATTGAAGCATTGAAATCATCTCGTCTTCCGTTGACTGGTGGTCCTCAAATTGGATCGTCGTCACAGCCAGTGAATGTTACAAAAGACTCTAGAACAAGCCTTGTGGAAAATGAAGTGTCCAAAATGGATCCTTATGCTTCTGGTCGGCCACCAGTTGCCCCAAGTGGTGGAGCACCTGATTATTATCAAGGATCTGTGGCTCAGAGGAGTAGCCAGTCTTTTGATCAAGGAAGTCCATCTAGTTTGGATTCTAGGTCTGCTAACTCACAGTCACAAGACAGACGTGATACTGCTAACTGGGACAAACAGGTGAATCAAAAGGATGGTAAGAAAGCTACGGCAAAGAGAAAGAGGGGAGATACATCATCACCTGTGGAACTGCATGTTGACAGTCCTCAGCTGGATCCTCGCAATACTGGTGTTAATGCAAGGAAGGGGAAAATGACCAAGGCTGAGTCGTCAGATGGTCTCCCAGTTAAAAGCGGTGAACTAACAAACTTTAACATGGCTCCAAATAGTTGTCAAATGGAGAATGTCTCAACATTGCCTGGTAGCATGAGAACAATGCTTAGAGCAAACCAAGAAGGTCATCATTTATTGGCGAAGCAAACTGATTTGACAAAGATTGGCAATCCGATGGTCCGAACACCTAATTCAAAGTATGCTGAAGACTCGGAAGTCTCCTCTGCACATATTGCTTCAGGAAAGCAGCAAGTGTTTGTTCCTGCTAATACAATGATAGAAAGTCCAATGCAGCAGTTAACACTTCCATCCCTTGGCTCAAGTGCTTATGCAAAAATTCATGGAGGGATGGCAATTCCAGCTGGTGCATCAATGGCTGAAGCTTTCTCAAATTCAATGCAATATGGTGGTGCAGTTGAGCGTGATGGGGGTAGTTCTACTAATTTAGCTGATGGACATAAAATTTCTCAGGTTGGCAGGCAAAATAGTGGCTCAGAAATGACTATGCTTAGACAAGGTGTTCCTCCAAGAGACACGGGAAAATCCACTGCTCCTGCCATGCCTTTCAAAGAACAACAGTTAAAACAGCTTCGTGCTCAGTGTCTTGTTTTTCTAGCATTTAGGAATGGTCTAGCACCAAAGAAACTGCATCTTGAAATTGCACTTGGAACGGCCTTTTCTAGAGAAGGTGACCGAAATGGTTCTCGCAAAGATTTATTTGACCACAAAGGAAAATCACAATCTTTTAATGGTTCAGGTAATGCATCTGGGGTCGGGATGCCGTTTGGTGGCCCAAGCAATGTGAGACAGACAGATAAAAACCCTTCAGGTTCCTCTTCAGCAGGAAAAATTGTTGAGGCTGACTCTTTGTCAAAGGGAACTGAGAGCCCAAGAACAATGGAGGACAAAGGTAATCTACATGTCATGAAAAGAGGAGAGGTTGAAAGACGGATTCAAGAAAGAGTGACTGCACAAGCCTCTTCAGTCACTTCATGTCAGCAGCAAGATTCTTCAAGTACAAGGGGAGCGGCAGTTGGTAATAATCATTTGGATGATGTTGACACTGGTAATATGCAGGTAGGAAGATCTAACCAATCTTCTGTTGTTGGCCCAAACAGCTGGGCTGGTTTTGCTGGTGCTAACGAGGCTTCAAAGGGACCTCCACAGATCTCTACTATTCAACATGAGTTGCCTATAGAAAGAAGAGAGAATATTCCTAGTCAGTTTCAAAATGTTAGTAACAATAGTGGTTCACGGAATCACAATTTGTCTTCTTTTTCTTTAAAAGAGCAATGGAAATCAGTTCTGGGGACCGACAGTGATCCCCATGGAGTAACCATGATGAAGGATGGAAATGTGATGATAAAACATGTTTCTCCAGATGGCTTCAAAACAGTTTCAGTTGATAATGCATCAAAGCATGGCATCCCTTTTGCTACGGAGCTGGATGGGAATGAGAGGTTGGCATCAGGGGATTTGCCATCTTCTCCAAAATATACAATGTCAGAGAGATGGGTCATGGATCAGCAGAAAAAGAGGCTTCTAGTTGAGCAAAATTGGGTGCAAAAACAGCAGAAAACCAAGCAAAGAATGGCTACTAGTTTTCATAAGTTAAAGGAAAATGTGAGCTCTTCTGAAGATATTTCTGCTAAAACCAAAAGTGTCATAGAGTTGAAAAAACTTCAACTACTAGAGCTCCAACGTCGTCTCCGAAGTGATTTTCTGAATGATTTTTTCAAACCGATTACAACTGAGATGGATCATTTAAAATCAATTAAGAAGCATAGACATGGTAGAAGGTTCAGACAACTTGAAAGGTATGAGCAGAAAATGAAGGAAGAGCGTCAGAAACGTATTCGTGAGAGGCAGAAGGAGTTTTTCAGTGAGATAGAGGTTCACAAGGAAAAACTTGATGATGTATTCAAAATCAAGAGGGAACGGTGGAAGGGTTTCAATAGATATGTGAAGGAGTTCCATAAAAGAAAAGAACGTATTCATCGTGAGAAGATTGATAGAATCCAGCGGGAAAAGATTAATTTACTGAAAATAAATGATGTGGAGGGATATCTTCGTATGGTGCAGGATGCAAAATCAGATCGTGTAAAGCAACTACTTAAAGAGACTGAGAAGTATCTCCAAAAGCTTGGGTCCAAGCTACAGGAAGCAAAGGCTGCAGCTGGACGTTTTGGACAGGAGGTTGATGATACAGGTCATGTCAGTTTTCTTGAGAATAGTGAAACAGAAAATGAAGATGAAAGTGATCAGGCAAAGGCAAGTTTGTCATACCATCTCTTTCTTAGGTTTAAAGCTAGATTGTCAAATATGAGACTTATGTTTTCCAATTCTTTTTTACAGCATTATATGGAAAGCAATGAGAAGTATTATAAGATGGCTCACAGTATAAAGGAGAGCATTGCTGAACAGCCATCTAGTTTGCAAGGGGGGAAATTGAGGGAATATCAAATGAATGGCCTGAGGTGGCTGGTTTCCCTTTACAACAATCATTTGAATGGAATTCTTGCTGATGAAATGGGATTGGGTAAAACAGTACAGGTTATTTCTTTAATTTGCTATCTGATGGAAACGAAAAATGATAGAGGACCATTTCTGGTGGTTGTGCCCTCTTCAGTGCTACCTGGTTGGGACTCAGAAATAAACTTCTGGGCTCCTGGTGTTCATAAAATTGTCTATGCTGGACCGCCAGAGGAGAGGCGTCGATTATTCAAGGAAAGGATTGTTCACCAGAAATTCAATGTTCTTTTGACTACATATGAATATTTGATGAATAAGCATGATAGACCAAAGCTTAGCAAAATACATTGGCATTATATAATAATTGATGAAGGCCACCGCATAAAGAATGCTTCTTGCAAGTTGAATGCTGACTTGAAACACTACCAGAGCTCTCACAGATTGCTGTTAACTGGAACACCATTGCAGAACAATCTTGAAGAACTGTGGGCACTACTTAATTTCTTGTTACCAAACATATTCAATTCTTCGGAGGACTTTTCTCAATGGTTTAACAAGCCATTTGAGAGTGCCGGGGATAGCTCACCTGATGAAGCACTATTGTCGGAGGAGGAGAATCTCTTGATCATAAATCGTCTGCACCAAGTTTTGAGACCATTTGTACTCAGGAGATTGAAACACAAGGTTGAAAACGAGCTGCCTGAGAAGATCGAGAGATTAATAAGATGTGAGGCTTCTTCGTATCAAAAACTTTTGATGAAGAGGGTGGAAGAAAATCTTGGTTCTATTGGCTCTTCAAAGGCTCGATCAGTGCACAACTCTGTCATGGAGCTTCGAAATATATGCAATCATCCCTATCTCAGCCAGCTTCATGCAGAGGAGCTTCAGTCAGAAACAGACAGTAAAGTAGATAACTTCATACCTAAACATTATCTGCCACCAATTATTCGACTCTGTGGGAAGCTTGAGATGTTGGACCGTTTATTGCCTAAATTGAAGGCAACAGATCATCGGGTTCTTTTCTTTTCGACAATGACTAGGCTTCTGGATGTTATGGAGGAATACTTAACCTTAAAACAGTATCGGTACCTCCGGTTGGATGGACATACATCAGGAGGTGATCGAGGTGCTCTGATTGAACTATTTAACCAACCTGAATCCCCATATTTTATTTTTTTGCTCAGTGGTCTCTTAAGAGGCTGGCTTGAGGGGGTTGAAAATAGTGCCCTGGCGGAGTGGACTGCGGCTGCAATTAGGGCCTCTGTAGCGGTGCTGTCCAGAGTTGTGGAATAG 4260 0.4169 METVINQHGLDIEALKSSRLPLTGGPQIGSSSQPVNVTKDSRTSLVENEVSKMDPYASGRPPVAPSGGAPDYYQGSVAQRSSQSFDQGSPSSLDSRSANSQSQDRRDTANWDKQVNQKDGKKATAKRKRGDTSSPVELHVDSPQLDPRNTGVNARKGKMTKAESSDGLPVKSGELTNFNMAPNSCQMENVSTLPGSMRTMLRANQEGHHLLAKQTDLTKIGNPMVRTPNSKYAEDSEVSSAHIASGKQQVFVPANTMIESPMQQLTLPSLGSSAYAKIHGGMAIPAGASMAEAFSNSMQYGGAVERDGGSSTNLADGHKISQVGRQNSGSEMTMLRQGVPPRDTGKSTAPAMPFKEQQLKQLRAQCLVFLAFRNGLAPKKLHLEIALGTAFSREGDRNGSRKDLFDHKGKSQSFNGSGNASGVGMPFGGPSNVRQTDKNPSGSSSAGKIVEADSLSKGTESPRTMEDKGNLHVMKRGEVERRIQERVTAQASSVTSCQQQDSSSTRGAAVGNNHLDDVDTGNMQVGRSNQSSVVGPNSWAGFAGANEASKGPPQISTIQHELPIERRENIPSQFQNVSNNSGSRNHNLSSFSLKEQWKSVLGTDSDPHGVTMMKDGNVMIKHVSPDGFKTVSVDNASKHGIPFATELDGNERLASGDLPSSPKYTMSERWVMDQQKKRLLVEQNWVQKQQKTKQRMATSFHKLKENVSSSEDISAKTKSVIELKKLQLLELQRRLRSDFLNDFFKPITTEMDHLKSIKKHRHGRRFRQLERYEQKMKEERQKRIRERQKEFFSEIEVHKEKLDDVFKIKRERWKGFNRYVKEFHKRKERIHREKIDRIQREKINLLKINDVEGYLRMVQDAKSDRVKQLLKETEKYLQKLGSKLQEAKAAAGRFGQEVDDTGHVSFLENSETENEDESDQAKASLSYHLFLRFKARLSNMRLMFSNSFLQHYMESNEKYYKMAHSIKESIAEQPSSLQGGKLREYQMNGLRWLVSLYNNHLNGILADEMGLGKTVQVISLICYLMETKNDRGPFLVVVPSSVLPGWDSEINFWAPGVHKIVYAGPPEERRRLFKERIVHQKFNVLLTTYEYLMNKHDRPKLSKIHWHYIIIDEGHRIKNASCKLNADLKHYQSSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFESAGDSSPDEALLSEEENLLIINRLHQVLRPFVLRRLKHKVENELPEKIERLIRCEASSYQKLLMKRVEENLGSIGSSKARSVHNSVMELRNICNHPYLSQLHAEELQSETDSKVDNFIPKHYLPPIIRLCGKLEMLDRLLPKLKATDHRVLFFSTMTRLLDVMEEYLTLKQYRYLRLDGHTSGGDRGALIELFNQPESPYFIFLLSGLLRGWLEGVENSALAEWTAAAIRASVAVLSRVVE 1419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03098 1419 MobiDBLite consensus disorder prediction 106 135 - -
Spst3g03098 1419 CDD DEXHc_SMARCA2_SMARCA4 979 1215 - -
Spst3g03098 1419 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 994 1161 IPR014001 -
Spst3g03098 1419 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 956 1213 IPR027417 -
Spst3g03098 1419 SMART ultradead3 978 1172 IPR014001 -
Spst3g03098 1419 MobiDBLite consensus disorder prediction 395 409 - -
Spst3g03098 1419 Coils Coil 769 789 - -
Spst3g03098 1419 FunFam Chromatin structure-remodeling complex protein SYD 973 1222 - -
Spst3g03098 1419 MobiDBLite consensus disorder prediction 75 105 - -
Spst3g03098 1419 MobiDBLite consensus disorder prediction 17 173 - -
Spst3g03098 1419 Pfam SNF2-related domain 986 1276 IPR000330 GO:0005524|GO:0140658
Spst3g03098 1419 CDD SF2_C_SNF 1301 1384 - -
Spst3g03098 1419 PANTHER SNF2/RAD54 HELICASE FAMILY 664 1384 - -
Spst3g03098 1419 Gene3D - 1223 1384 IPR027417 -
Spst3g03098 1419 Gene3D - 973 1222 IPR038718 -
Spst3g03098 1419 MobiDBLite consensus disorder prediction 432 450 - -
Spst3g03098 1419 ProSiteProfiles HSA domain profile. 774 848 IPR014012 -
Spst3g03098 1419 SMART QLQ_2 352 387 IPR014978 GO:0005524|GO:0005634|GO:0006355
Spst3g03098 1419 MobiDBLite consensus disorder prediction 23 44 - -
Spst3g03098 1419 MobiDBLite consensus disorder prediction 393 512 - -
Spst3g03098 1419 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1215 1384 IPR027417 -
Spst3g03098 1419 Coils Coil 870 890 - -
Spst3g03098 1419 MobiDBLite consensus disorder prediction 460 485 - -
Spst3g03098 1419 MobiDBLite consensus disorder prediction 486 510 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03098 Spst-Chr3 80823101 80833607 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03098 1003 1276 RAD5 or RAD16-like Gene Family AT5G22750 28.235 2.77e-24 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Spst3g03098 SNF2_N 4.1e-69 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03098 - - gmx:100815262 2353.94