Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03093 ATGGATGATGGGTTGGAGCATAGTTGGTGGGCCAACATGCCTCACGAGCTTCTCAGAGAGGTCCTCTTCCGAATTGAGTCGTCGGAGGCCAAGTGGCCGTCGCGGAGGAGCGTGGTGGCCTGTGCTGGAGTGTGCCGCGCCTGGAGGTTCATCGTCAAGGAGATTGTCAAGCCACCTCAACTCTCTTCCAACATGACCTTCCCCACCTCTCTCAAACAGCCTGGTCCAAGGGAACATCTACTTCAGTGCTTCATTAGGCGCAACAGTGGCACACAGACATATTATCTGTTTCTCAGTTTATCTAGTGCACTAGCTGATGATGGGAAGTTCCTTCTAGCCGCACGCAAGTTCAGACGCCCAACCTGCACAGATTATGTTATCTCCCTGGATGCAGATGATATGTCCAGGGAAAGCAATGCCTACGTAGGGAAATTGAGATCAAATTTTTTGGGAACCAAGTTCACAATCTACGATAGCCAACTGCCTCATGCAGGAGCAAAGTTGACAAAAAGTTGCTCCTCTAAGCTGGCGAATCCAAAACAAGTTTCACCTAAGGTCCCAACAGGAAACTATCCAGTTGCCCACATCTCATATGAATTGAATGTATTAGGTTCCAGGGGGCCAAGGAGAATGCATTGTGTCATAGACAACATTCTTACTTCTGCTATTGAACCAGAAGGGGTTGCTCCTTCACAGACCAGTTATTCTGTTAGTAACCTAGGTACTTCATTCCCATTTTTTCAGACAAACTCAACTCGTCTGGAAAACTCCATATCTGGATACCAGAACAATAAAAAAGATGACGTTCTAGTGTTGAGAAATAAGGCTGCCAGGTGGCATGAGCAGCTGCAGTGTTGGTGCTTAAACTTTCATGGGCGAGTGACAATTGCTTCAGTTAAAAACTTTCAGCTGGCTGCTTTGCCAGTAAATGGACATGCTGAACCTCAAGAGGATGAGATCATCCTTCAGTTTGGAAAAGTTGGGAAGGACTTGTTCACAATGGATTATCGGTACCCCATCTCAGCATTTCAGGCATTTGCAATCTGCCTCAGCAGCTTTGCGACCACTGTTGCTTGCGAATGA 1083 0.47 MDDGLEHSWWANMPHELLREVLFRIESSEAKWPSRRSVVACAGVCRAWRFIVKEIVKPPQLSSNMTFPTSLKQPGPREHLLQCFIRRNSGTQTYYLFLSLSSALADDGKFLLAARKFRRPTCTDYVISLDADDMSRESNAYVGKLRSNFLGTKFTIYDSQLPHAGAKLTKSCSSKLANPKQVSPKVPTGNYPVAHISYELNVLGSRGPRRMHCVIDNILTSAIEPEGVAPSQTSYSVSNLGTSFPFFQTNSTRLENSISGYQNNKKDDVLVLRNKAARWHEQLQCWCLNFHGRVTIASVKNFQLAALPVNGHAEPQEDEIILQFGKVGKDLFTMDYRYPISAFQAFAICLSSFATTVACE 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03093 360 PRINTS Tubby superfamily signature 272 289 IPR000007 -
Spst3g03093 360 PRINTS Tubby superfamily signature 125 141 IPR000007 -
Spst3g03093 360 PRINTS Tubby superfamily signature 141 165 IPR000007 -
Spst3g03093 360 PRINTS Tubby superfamily signature 190 217 IPR000007 -
Spst3g03093 360 PRINTS Tubby superfamily signature 338 360 IPR000007 -
Spst3g03093 360 PRINTS Tubby superfamily signature 290 306 IPR000007 -
Spst3g03093 360 PRINTS Tubby superfamily signature 317 336 IPR000007 -
Spst3g03093 360 Pfam Tub family 71 355 IPR000007 -
Spst3g03093 360 CDD F-box_AtTLP-like 10 54 - -
Spst3g03093 360 Pfam F-box domain 10 56 IPR001810 GO:0005515
Spst3g03093 360 ProSitePatterns Tub family signature 1. 290 303 IPR018066 -
Spst3g03093 360 PANTHER TUBBY-RELATED 8 357 - -
Spst3g03093 360 Gene3D Tubby Protein; Chain A 65 360 IPR025659 -
Spst3g03093 360 SUPERFAMILY Tubby C-terminal domain-like 59 360 IPR025659 -
Spst3g03093 360 SUPERFAMILY F-box domain 4 54 IPR036047 GO:0005515
Spst3g03093 360 FunFam Tubby-like F-box protein 67 360 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03093 Spst-Chr3 80783543 80786061 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03093 3 360 TUB Transcription Factor Family AT2G47900 65.840 3.67e-175 491
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Spst3g03093 Tub 1.1e-107 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03093 K19600 - gmx:100794141 624.394
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03093 3 80783543 80786061 Spst3g03093 3 80783543 80786061 ECH
Spst3g03093 3 80783543 80786061 Spst6g01069 6 9781042 9784614 PCT