Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03086 ATGCAAGGCCACACTACTGAAAAGGAAACTGAAACTCGCTCTACTATGCCACCACTCTCTCAAATCCCACCTTCTTCTTCTTCACTTCACCCTTCAACCAATGATGAAACGACGGCTGACACCATCTCCAGAAAGCGCGTTAAGAAAATTGGTCATACAAATTGCGAGAGCCTTAACATGGAACGTGAAAGAAGGTCCAAGATGACTCAAATGTTCTCGCAGCTTCGAAACTCTGTCCCTGGTCTCTTACCTCAGGCTACAAGGGAAGTGATAATAAACGAGACAATTGGGTACATAAAGGAGCTTGAAAAGACGAAGCAAAGGTTGGAGGAGTTGAAGGAGACGGTAAAAGGAGTAGAAGGGTCGATGGTTGATTGTGGTAACGATAATAGAAATTGTTCAATCACGGTTACTGTCTCCGCTAATGTTGCATTCTTTGGTATTCAATCGGTGCCTCGACCCGGTTTGGTGACTCAAATTTTGAAGGTGTTTTGCAATCACCGAACAGAGATTTTGGCTGCAAATGTGTCGAATAACAATGGGAAATTGATACTGGCAATCACAGCGTTGGTGCAAAAGAATGGAAATGTTGCTTTTGTCCTGGGAAGGAAGACATCAGGATGTTTGTTAAAGAACAAAAGTGATTCATTGTCTAAGAAAAGCATTGTAAAGCATGGGGTGGACCCCGCGGACATATAA 699 0.432 MQGHTTEKETETRSTMPPLSQIPPSSSSLHPSTNDETTADTISRKRVKKIGHTNCESLNMERERRSKMTQMFSQLRNSVPGLLPQATREVIINETIGYIKELEKTKQRLEELKETVKGVEGSMVDCGNDNRNCSITVTVSANVAFFGIQSVPRPGLVTQILKVFCNHRTEILAANVSNNNGKLILAITALVQKNGNVAFVLGRKTSGCLLKNKSDSLSKKSIVKHGVDPADI 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03086 232 Gene3D - 37 118 IPR036638 GO:0046983
Spst3g03086 232 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 52 102 IPR011598 GO:0046983
Spst3g03086 232 SMART finulus 58 108 IPR011598 GO:0046983
Spst3g03086 232 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 53 204 IPR044278 GO:0003700|GO:0006355|GO:0009960
Spst3g03086 232 MobiDBLite consensus disorder prediction 1 41 - -
Spst3g03086 232 Pfam Helix-loop-helix DNA-binding domain 60 103 IPR011598 GO:0046983
Spst3g03086 232 MobiDBLite consensus disorder prediction 12 38 - -
Spst3g03086 232 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 59 116 IPR036638 GO:0046983
Spst3g03086 232 Coils Coil 92 122 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03086 23 110 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 37.895 1.68e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Spst3g03086 HLH 4.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03086 - - gmx:102670256 260.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03086 3 80734435 80735549 Spst3g03086 3 80734435 80735549 ECH