Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03084 ATGGAAGGCTCTGTCAACGAACGCCTTGATTTTGGGAAGATGGGATATGGGTGCAGGCATTACAGGAGAAGATGCGGGATTCGTGCCCCCTGCTGCAACGAGATCTATGGATGCCGTCACTGTCACAACGAGGAAGCGAACTTGTTGAAGAATCCCCTTGATCGCCACGAACTCGTTCGCCAAGATGTTAAGCAAGTTGTTTGTGCAGTTTGTGACACTGAGCAATCTGTTGCTCAAGTTTGCACTAACTGTGGCGTCAAAATGGGAGAATATTTCTGCAACATATGCAAATTCTTTGATGATGATACAGAGAAACAACAGTTTCATTGCGATGATTGTGGGATCTGCAGGGTTGGTGGACGAGAAAATTTTTTCCATTGCAAGAAGTGTGGATCTTGTTATTCAGTTGGTCTCCGTGATAATCATTTATGTGTGGAGAACTCAATGAGGCATCACTGCCCCATTTGTTATGAGTACCTTTTTGATTCATTGAAAGAGACCATTGTTATGAAATGTGGTCACACAATGCACCAAGAATGTTACCAGGAGATGATAAAACGTGACAAATATTGCTGTCCCATATGCTCTAAGTCGGTGGTGGACATGTCGAGGACGTGGAAGAGAATTGATGAAGAGATTGAAGCAACTATGATGCCTGAAGATTATCGATACAGGAAGGTTTGGATACTATGTAATGACTGCAACGATACAACAGAAGTTTACTTCCACATTCTTGGCCAAAAATGCGGCCATTGCAATTCATATAATACTCGCGCAATTGCTCCTCCAGTTCTTCCTCAATGA 804 0.4303 MEGSVNERLDFGKMGYGCRHYRRRCGIRAPCCNEIYGCRHCHNEEANLLKNPLDRHELVRQDVKQVVCAVCDTEQSVAQVCTNCGVKMGEYFCNICKFFDDDTEKQQFHCDDCGICRVGGRENFFHCKKCGSCYSVGLRDNHLCVENSMRHHCPICYEYLFDSLKETIVMKCGHTMHQECYQEMIKRDKYCCPICSKSVVDMSRTWKRIDEEIEATMMPEDYRYRKVWILCNDCNDTTEVYFHILGQKCGHCNSYNTRAIAPPVLPQ 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03084 267 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 13 263 - -
Spst3g03084 267 FunFam RING finger and CHY zinc finger domain-containing protein 1 224 266 - -
Spst3g03084 267 Pfam CHY zinc finger 18 98 IPR008913 GO:0008270
Spst3g03084 267 SUPERFAMILY CHY zinc finger-like 15 87 IPR037274 GO:0008270
Spst3g03084 267 SUPERFAMILY Zinc hairpin stack 89 146 IPR037275 -
Spst3g03084 267 Pfam Zinc-ribbon 200 258 IPR039512 -
Spst3g03084 267 CDD RING-H2_Pirh2-like 152 196 - -
Spst3g03084 267 Gene3D - 227 262 - -
Spst3g03084 267 ProSiteProfiles Zinc finger RING-type profile. 153 196 IPR001841 -
Spst3g03084 267 SUPERFAMILY RING/U-box 152 202 - -
Spst3g03084 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 226 IPR013083 -
Spst3g03084 267 ProSiteProfiles Zinc finger CHY-type profile. 11 86 IPR008913 GO:0008270
Spst3g03084 267 Pfam Ring finger domain 152 195 IPR001841 -
Spst3g03084 267 SMART ring_2 153 195 IPR001841 -
Spst3g03084 267 ProSiteProfiles Zinc finger CTCHY-type profile. 88 152 IPR017921 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03084 Spst-Chr3 80723572 80726369 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03084 2 266 C2H2 Transcription Factor Family AT3G18290 38.710 1.95e-54 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03084 K10144 - gmx:100792038 550.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03084 3 80723572 80726369 Spst3g03084 3 80723572 80726369 ECH
Spst3g03084 3 80723572 80726369 Spst6g01060 6 9739822 9742922 PCT