Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03073 ATGTCAACCTCTAGAACCTCAGATACATCCTTCAAAGCATATGACCCCAACCAAACTCAAATGTGTCTCTCTCTTCTCCAACGCAACACATCCCCTTGTGGTGAGAGAAGAGGCAGAAGGAAGCAAGCAGAGCCAGGGAGGTTCCTTGGGGTAAGGAGGCGCCCTTGGGGTCGATATGCTGCTGAAATCAGAGACCCCACAACCAAAGAGAGGCATTGGCTAGGCACATTTGACACTGCTCAAGAAGCAGCTCTTGCTTATGACAGAGCTGCTCTGTCCATGAAAGGAAGCCAGGCAAGAACCAACTTTGTTTACTCTGACAACATCAACTTCCACACTGTCCTTTCTCCTGTGGATGTTCAAGTTCAAGTTCAAGTTCAACCTCTCCTGCCAGCTTCACAGTTCCTCACTAACACCACTCACACCAAACAACCAAACAACCAAAATAGCCTCCCTCAGGTTATTCACACTTCAAACTCTGGAAACCCCTCCCCGTTGAACAATGACGTATGTGTTGAAACCACATATGGGTCAGCTCAGGATGATAGTTTCTTCTTTTCCACTGATTCTAACTCAGGCTATCTGGAATGCATAGTACCTGATAACTGTTTCAGACCTGCTTCCTCCAGCACCAACAGTTCAAACTCCAGAAAGAGCAATGTGAGTGATCAAAAGGCTAACACATGCTCCACGGAGAGTACCAATTATCACCAGAACTCACATGTTGACATGACTTCATTCTCTCAAGAAGGCATGGAAATGGCTCCAAGGGCCTCTTACTTTTCAGATTTTTGTTATCCAAGTGAACTGAGTCAAGGATCATGGGATGATCAACAATCATGGGATTGGAACTGCAGTGAACTTTCAGCTATATTTAAAAACCCATTAAGGGTGGAAAATGGGTGCATGGATGCATTGTACCCCATCACTGATCATAGTCCTAGTCCAAGTCCAAGCTATGGGCTAATGAATGAGGCTGCTTCTTCTACTACCTGTTCTCCATCACTTCCACCCTTTGGGGACGTAGACTTGGGATACCCACTCTTCTGA 1050 0.459 MSTSRTSDTSFKAYDPNQTQMCLSLLQRNTSPCGERRGRRKQAEPGRFLGVRRRPWGRYAAEIRDPTTKERHWLGTFDTAQEAALAYDRAALSMKGSQARTNFVYSDNINFHTVLSPVDVQVQVQVQPLLPASQFLTNTTHTKQPNNQNSLPQVIHTSNSGNPSPLNNDVCVETTYGSAQDDSFFFSTDSNSGYLECIVPDNCFRPASSSTNSSNSRKSNVSDQKANTCSTESTNYHQNSHVDMTSFSQEGMEMAPRASYFSDFCYPSELSQGSWDDQQSWDWNCSELSAIFKNPLRVENGCMDALYPITDHSPSPSPSYGLMNEAASSTTCSPSLPPFGDVDLGYPLF 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03073 349 MobiDBLite consensus disorder prediction 139 166 - -
Spst3g03073 349 ProSiteProfiles AP2/ERF domain profile. 47 104 IPR001471 GO:0003700|GO:0006355
Spst3g03073 349 Pfam AP2 domain 50 96 IPR001471 GO:0003700|GO:0006355
Spst3g03073 349 FunFam Ethylene-responsive transcription factor 2 47 105 - -
Spst3g03073 349 CDD AP2 47 103 IPR001471 GO:0003700|GO:0006355
Spst3g03073 349 SUPERFAMILY DNA-binding domain 48 105 IPR016177 GO:0003677
Spst3g03073 349 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 33 253 - -
Spst3g03073 349 Gene3D AP2/ERF domain 47 105 IPR036955 GO:0003700|GO:0006355
Spst3g03073 349 MobiDBLite consensus disorder prediction 208 235 - -
Spst3g03073 349 PRINTS Ethylene responsive element binding protein signature 48 59 IPR001471 GO:0003700|GO:0006355
Spst3g03073 349 PRINTS Ethylene responsive element binding protein signature 70 86 IPR001471 GO:0003700|GO:0006355
Spst3g03073 349 SMART rav1_2 47 110 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03073 Spst-Chr3 80614302 80615351 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03073 1 230 AP2-EREBP Transcription Factor Family AT5G18560 44.526 3.54e-60 195
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Spst3g03073 AP2 1.5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03073 - - gmx:100812047 577.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03073 3 80614302 80615351 Spst6g01048 6 9592065 9593030 PCT