Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03071 ATGGTGAATCCCCACACTCACAGAGTTCTTCTCTTTCTCCGACTGAACAAGTTCTCAACCCTAAGAACACATCACTCTCATCATTCTCTTCTAAATCTTAATATCAACCCACCCTTCTCCCTCCGCTTCAATTACAAATTCGCCACCGTCCCCAACGCCCGCTCCTTCGCCGTTTCGTACCTCGTCTCCACCTGCGGCTTCTCCTCGGAATCCGCTCTCTCCGCCTCCCGCAACCTCCACTTCGACAGCCCCCGGAAGCCCGACTCCGTCCTCGCCTTCTTCTCCGCTCACGGCTTCTCCCTCTCCCAAATCCGCACCATCGTCAAATGTGTAAACCGCATCCTTCTCTGCAACCCCAACAAGGTCCTCCTCCCCAAATTCCTCTTCCTCCGCTCCAAAGGTGCCTCCGACGCCGACATAGTCCACATGGTCACCACCGGCCCTCTCTTCCTCACCCGCAGCCTCGCCAACCACATCGTCCCCTCCTACCTCTTCGTTAAACGCTTCTTCGACTCCAACAAGCAAACCATGGCTTGTCTCAGACGCAACTTCTGCTTCATTTCCGCTACCGGTTTTTCGCTTAACGTCCAAATGCTCCTCGATAACGGCGTCAAACGCTCCAGCATCGCCAAGCTGCTCCGCATGTGGCCCTCTATCCTCTGCTCCTATAACTTGTCCAACACGGTTCGTGAATTGAAGGAAATGGGGTTTTGCCCTTCCACGACTTCTTTCGCCGTGGCTTTGCTCGCCAAAAGGACTGTGAATAAAGCCAAGTGGGGCGATAAGGTTGAGGTTTTCAAGAAGTGGGGGTGGTCGGAGGAGCATGTGCTTATGGCGTTTAGGAGGCATCCTTATTGCATGTTGTCATCCCCTAAGAAGATTGATGCTGTGTTTAGCTTTTGGGTTGAGGAGTTAGGGTATAGTTCTTTGGAGCTTTTCAAGTCTCCTATTATCTTTCAGCTGAGTCTCCAGAAGAGGATTGTTCCCAGGTCTTTGGTTCTGAGGTTTCTCGCCAAGAAAGATTTGAGGAAAAAGGGTGCTAGTTATGTCACGCCGTTTCTCATGACGGAGAATGTGTTCCTGGAGAAGTTTGTCAATCGTTATGAGAAGCATTCTTCTCAGTTGTTGAAGATGTATGAGAAAAGTAAGAATGTTGCGAATATCGGGGAGGAGGAGGAGGAGGAGAAGAAGAAAATTCTTTGCTTGTAG 1209 0.507 MVNPHTHRVLLFLRLNKFSTLRTHHSHHSLLNLNINPPFSLRFNYKFATVPNARSFAVSYLVSTCGFSSESALSASRNLHFDSPRKPDSVLAFFSAHGFSLSQIRTIVKCVNRILLCNPNKVLLPKFLFLRSKGASDADIVHMVTTGPLFLTRSLANHIVPSYLFVKRFFDSNKQTMACLRRNFCFISATGFSLNVQMLLDNGVKRSSIAKLLRMWPSILCSYNLSNTVRELKEMGFCPSTTSFAVALLAKRTVNKAKWGDKVEVFKKWGWSEEHVLMAFRRHPYCMLSSPKKIDAVFSFWVEELGYSSLELFKSPIIFQLSLQKRIVPRSLVLRFLAKKDLRKKGASYVTPFLMTENVFLEKFVNRYEKHSSQLLKMYEKSKNVANIGEEEEEEKKKILCL 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03071 402 PANTHER CGI-12 PROTEIN-RELATED 54 368 IPR003690 GO:0003690|GO:0006355
Spst3g03071 402 Gene3D Transcription termination factor 3, mitochondrial 176 378 IPR038538 -
Spst3g03071 402 SMART mt_12 141 172 IPR003690 GO:0003690|GO:0006355
Spst3g03071 402 SMART mt_12 105 136 IPR003690 GO:0003690|GO:0006355
Spst3g03071 402 SMART mt_12 210 238 IPR003690 GO:0003690|GO:0006355
Spst3g03071 402 SMART mt_12 309 343 IPR003690 GO:0003690|GO:0006355
Spst3g03071 402 SMART mt_12 277 308 IPR003690 GO:0003690|GO:0006355
Spst3g03071 402 FunFam Mitochondrial transcription termination factor-like 155 372 - -
Spst3g03071 402 Pfam mTERF 91 183 IPR003690 GO:0003690|GO:0006355
Spst3g03071 402 Pfam mTERF 192 343 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03071 Spst-Chr3 80541723 80542931 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Spst3g03071 mTERF 9.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03071 K15031 - gmx:100788877 379.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03071 3 80541723 80542931 Spst3g03071 3 80541723 80542931 ECH