Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03063 ATGGTGATTGATCTTCACTCTTTTGAACTGACTCAAAAGCCTCCTCAGCATCCATTAGCAGCGATGAAGCCAATGAAAATCATGGATCCCTTGGTAGTTGAAGTGTTGGAGTTGAATTCATTCCTTCCAGAGATGGTGGATAACGTTGTTGGAGGGAGTTCCTCCAATGCTGAAAATAGTGGCATCAGAGAACAAGACCGTTTGTTGCCAATAGCCAATGTTGGGAGGATCATGAAGCAGATTCTGCCTCCTAACGCCAAAATCTCAAAGGAATCAAAGGAAACAATGCAAGAGTGCGTGTCAGAGTTCATAAGCTTTGTGACGAGCGAGGCATCAGAGAAGTGCAGGAAGGAGAGGAGGAAGACTGTGAACGGAGATGATATATGCTGGGCCTTAGGATCCCTTGGTTTTGATGACTATGCAGAGCCATTGAGAAGGTATTTGCATAGATATAGAGAAGTAGAAGTAGATAGATCAGGTAACCAAGAGAGAGGAAATAGCCCCCCGGGAAGAGAAGAATAG 522 0.4464 MVIDLHSFELTQKPPQHPLAAMKPMKIMDPLVVEVLELNSFLPEMVDNVVGGSSSNAENSGIREQDRLLPIANVGRIMKQILPPNAKISKESKETMQECVSEFISFVTSEASEKCRKERRKTVNGDDICWALGSLGFDDYAEPLRRYLHRYREVEVDRSGNQERGNSPPGREE 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03063 173 PRINTS CCAAT-binding transcription factor subunit A signature 115 133 - -
Spst3g03063 173 PRINTS CCAAT-binding transcription factor subunit A signature 96 114 - -
Spst3g03063 173 PRINTS CCAAT-binding transcription factor subunit A signature 134 152 - -
Spst3g03063 173 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 55 159 IPR027113 GO:0001228|GO:0006355|GO:0016602
Spst3g03063 173 FunFam Nuclear transcription factor Y subunit B-3 57 173 - -
Spst3g03063 173 SUPERFAMILY Histone-fold 65 165 IPR009072 GO:0046982
Spst3g03063 173 ProSitePatterns NF-YB/HAP3 subunit signature. 99 115 IPR003956 GO:0005634|GO:0006355|GO:0043565
Spst3g03063 173 Gene3D Histone, subunit A 57 173 IPR009072 GO:0046982
Spst3g03063 173 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 68 132 IPR003958 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03063 Spst-Chr3 80380440 80381229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03063 62 165 CCAAT-HAP3 Transcription Factor Family AT2G47810 73.077 3.65e-56 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Spst3g03063 CBFD_NFYB_HMF 8e-27 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03063 K08065 - gmx:100786046 228.794
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03063 3 80380440 80381229 Spst9g03052 9 64544674 64545084 PCT