Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03062 ATGAACACCATTCTTTGCCTCCGCCTGAGGCTGAGTCCAACACCTCTTTTCTATTATTACACCAAATCCCCTTTTCTGCAACCCTCTCTCTTTTTCTCAACAACCACTTCTGATCCCCACGCCTTCACCATTTCCTACCTCACCAACACCTGCGGCTTCTCGCGCGAGGTCGCTCTGAAACTAACCAAACGAATTCGTTTCAACTCCGCCGATAAACCTGATTCCGTCATCTCCTTCTTCCGAACCCACGGTTTCTCCACCTCCCAAATCCACCACATCTTCTGTCGAGGCCCCGATCTCATGCTATGCAACCCTACCCAAAGGCTTCTCCCCAAATTCCACTTCTTGGCTTCCAAAGGCGCTTCTCCCTCCGTGATCGTTAACATGGTCACCAAGAGCCCCCGTTTCCTCCGTTACAGCCTCAACAACCACATCAGTCCCACCTTCCAAATGCTCCGGACGTTCCTTCCCTCCGACCACAAAGCCCTCTCAGTTTTCGTCGCCTGTCCCAATTTCATTGGCGACTGTCGCGTCGCGTCCAACGTTGACATGTTGCTGGACGCCGGAGTCAAGCACTCTAGCATTCGCTTGTTGCTCCGCTGTCGTCCTTCGGTTCTCTGCTCCGACCTGAGAACTGCCATGGAGGAAGTGAAGCTGTTGGGGTTTAACCCTCTGAAGCTGACTTTCATTCTGGCGCTTCTGGCCAAAAGGGCTGTTTCGAAATCCCTTTGGGATGCCAAAGTCGATGTCTTGAAGAAATGGGGTTGGTCTGAGGATGAGATTTTGGTTGCGTTTAGGAACCAGCCTAACATGATGCTGCGCTCAACGAAGAAACTTAATGCAGTGATGGAGTTTTGGGTAGGTAGACTTGGTTGGGATCATTCCGCGCTTGTTGCGTCCCCAACGTTGTTTTCGTACAGTTTGGAGAACAGGGTTGTTCCGAGGGCTTTGGTTGTGCAGTATCTTCTCTCCAAAGGACTGGTGAAGAAGGATGCTAGCTTGGTCACCCCGTTTGGTATGTCTGATGAGTGGTTTCTGGAAAAGTATGTGAGACGTTTCAAGGAGGAAACGCCCAGGTTACTAGAGCTATATCAGGAGAGCAAGAAGTTTTCTCGCTGTAGAAAGCCTTTGCAATTAATTTTGATATCGATTCCCTTCAGCCCTTCTTCTCGAGCGCAAGAGGCTATACAAATCAAATTTCTTTCTTACTATGGTGACAATTCAATTTTGAGCCAGTTTAGAACTGATGACATATCAGAAATGCTTGCCTTGCTTAGGCAATCTGGCACTGATTCTGCCATGAATTTGAAGAAAGGTTATTCTTCTTCCAGGGCAGCTGGTGCTTCATCCCTTGACATTGTTTACATTGTGACCACCAGCCCTCATTTCCTCAGACGAAGCTTGGAGAATCATATAATCCCAGCATATGAACTTGTAGGCGGGTTCCTCCAATCCTTGTTTACAGACAAGCAAATCATTGATTTTCTGATTCAGAAACATTATTTATTTGATGACGGCCATCTGGTACCTAATGTCAAATTGTTGCTTGATAATGGAGTTACCCGCTCAAACATTGTTAAATTCTCCAGAGATGGCCTATTGTACTCTGCTCTGGCTCTGGCAACTTTAAACAAAAGCAAATGGACCGAGAAGATTAACACTTGTAAAAGTTGGGGGTGGTCCCAAGAACAAGTTCTTCTAGCATTTAGGAGGCAGCCATATTGTATGCTGTCATCCCCTGCTAAAATTAATGCAGTGATGAGTTATTTGGTCGAGCAGGGCTTCCGTTGTGCAGCTTCTTATCTCAAGTATGTGAAACGTTTTAAGGAGGATTCTTCACATCTGTTAAAGCTGTACACAGAAAAGATGAGTCTTGGAAATGATAGGGATAGCACTTATGACTTTTGTCAGATAGCTAGTTTAGCCTCAGCTAGAAATTTGTGA 1944 0.464 MNTILCLRLRLSPTPLFYYYTKSPFLQPSLFFSTTTSDPHAFTISYLTNTCGFSREVALKLTKRIRFNSADKPDSVISFFRTHGFSTSQIHHIFCRGPDLMLCNPTQRLLPKFHFLASKGASPSVIVNMVTKSPRFLRYSLNNHISPTFQMLRTFLPSDHKALSVFVACPNFIGDCRVASNVDMLLDAGVKHSSIRLLLRCRPSVLCSDLRTAMEEVKLLGFNPLKLTFILALLAKRAVSKSLWDAKVDVLKKWGWSEDEILVAFRNQPNMMLRSTKKLNAVMEFWVGRLGWDHSALVASPTLFSYSLENRVVPRALVVQYLLSKGLVKKDASLVTPFGMSDEWFLEKYVRRFKEETPRLLELYQESKKFSRCRKPLQLILISIPFSPSSRAQEAIQIKFLSYYGDNSILSQFRTDDISEMLALLRQSGTDSAMNLKKGYSSSRAAGASSLDIVYIVTTSPHFLRRSLENHIIPAYELVGGFLQSLFTDKQIIDFLIQKHYLFDDGHLVPNVKLLLDNGVTRSNIVKFSRDGLLYSALALATLNKSKWTEKINTCKSWGWSQEQVLLAFRRQPYCMLSSPAKINAVMSYLVEQGFRCAASYLKYVKRFKEDSSHLLKLYTEKMSLGNDRDSTYDFCQIASLASARNL 647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03062 647 PANTHER CGI-12 PROTEIN-RELATED 405 592 IPR003690 GO:0003690|GO:0006355
Spst3g03062 647 SMART mt_12 127 158 IPR003690 GO:0003690|GO:0006355
Spst3g03062 647 SMART mt_12 196 223 IPR003690 GO:0003690|GO:0006355
Spst3g03062 647 SMART mt_12 262 293 IPR003690 GO:0003690|GO:0006355
Spst3g03062 647 SMART mt_12 294 328 IPR003690 GO:0003690|GO:0006355
Spst3g03062 647 SMART mt_12 91 122 IPR003690 GO:0003690|GO:0006355
Spst3g03062 647 SMART mt_12 454 485 IPR003690 GO:0003690|GO:0006355
Spst3g03062 647 SMART mt_12 566 596 IPR003690 GO:0003690|GO:0006355
Spst3g03062 647 Gene3D Transcription termination factor 3, mitochondrial 414 617 IPR038538 -
Spst3g03062 647 Gene3D Transcription termination factor 3, mitochondrial 174 359 IPR038538 -
Spst3g03062 647 FunFam Mitochondrial transcription termination factor-like 141 357 - -
Spst3g03062 647 Pfam mTERF 445 592 IPR003690 GO:0003690|GO:0006355
Spst3g03062 647 Pfam mTERF 244 345 IPR003690 GO:0003690|GO:0006355
Spst3g03062 647 Pfam mTERF 77 217 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03062 Spst-Chr3 80362096 80366293 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Spst3g03062 mTERF 1.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03062 K15031 - gmx:102666739 347.051
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03062 3 80362096 80366293 Spst3g03062 3 80362096 80366293 ECH