Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03021 ATGGAAATCGACGAAGGCAAGGAAATCGAAGCGAATGACTACGCGCTCAGCGGCAGGATAATGCTAACCGCCATCGTCGTTCTTTTCGTCGTCATCGTCATAATGCTTTGCCTCCACGTCTACGTCCGCTGCAGCCTTGTTCGCGCTCGCCGCCAGCAAAACATCCGCCGCAGAAGCAACCGCTCGCAGTTCGTGTTTTACATCGACCCCGCCGCCCGCATTGCCCTCACCTCACGCGGCCTCCACACCTCAGTCATCTCCACGCTCCCGGTCTTCACCTTCTCCGCTTCCACCCAACCGCTGGAATGCGCGGTTTGCTTGTCGGAGTTTGAGAACGGAGAAACGGGTCGGGTCTTACCCAAATGCAACCACAGTTTTCACACTGAGTGCATCGACATGTGGTTCCAGTCCCACACCACATGTCCGCTTTGCAGGGCGCCTGTTGAGGCCATACCCGAGGGAGAAACCCGGTCTGAGGTGACTTTTGTGTGTGAACCTGAACTTGTTCGGGAAGAAGTGGACCAGCCTAGACCGATAGGTTCTTCTTCGCTGAATAACGAAAGCTTGGGGCGTGAGACGGAGTCGTCGTTTTGTTCGCAGGTGAGTCGGATAGTGTCGTTTAAGAGAATTCTGAGTAGAGAAAAGAAGGGAAGCGTTTCGGGGTGTGTGGTGGAAGGTTGCAGCTCCATGACCGAGTTAGCCGCTCAACGGGGAGAGTGTGACTCAGTTAGTTGTTGA 738 0.5501 MEIDEGKEIEANDYALSGRIMLTAIVVLFVVIVIMLCLHVYVRCSLVRARRQQNIRRRSNRSQFVFYIDPAARIALTSRGLHTSVISTLPVFTFSASTQPLECAVCLSEFENGETGRVLPKCNHSFHTECIDMWFQSHTTCPLCRAPVEAIPEGETRSEVTFVCEPELVREEVDQPRPIGSSSLNNESLGRETESSFCSQVSRIVSFKRILSREKKGSVSGCVVEGCSSMTELAAQRGECDSVSC 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03021 245 CDD RING-H2_EL5-like 102 145 - -
Spst3g03021 245 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 14 153 IPR044675 -
Spst3g03021 245 FunFam RING-H2 finger protein ATL3 78 150 - -
Spst3g03021 245 SMART ring_2 103 144 IPR001841 -
Spst3g03021 245 Pfam Ring finger domain 102 145 IPR001841 -
Spst3g03021 245 SUPERFAMILY RING/U-box 100 151 - -
Spst3g03021 245 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 71 150 IPR013083 -
Spst3g03021 245 ProSiteProfiles Zinc finger RING-type profile. 103 145 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03021 Spst-Chr3 79858660 79859397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03021 14 220 Rapid Response to Elicitors AT3G16720 42.800 6.66e-52 169
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03021 - - var:108338887 354.369
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03021 3 79858660 79859397 Spst3g03021 3 79858660 79859397 ECH
Spst3g03021 3 79858660 79859397 Spst9g03130 9 64967159 64968019 PCT