Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03019 ATGGCGACTGGGTTCGACAGCGCTCATGCGAAGAAGAAGAAGTTCGCGATTCTGACCGTGTCTTCCGTACTTCTCGTGGCGATGGTTGCGGCGGTGGCCGTCGGCATAAGAGACGGCGTCGAGATCGTGGAGGAAGAAATAGGCGGCGGCGGCGAAGGCGAAGGCATCGTGAAATCTCAGAGGAGCGTGCAAATGATATGCCAATCCGCCGAATACAAACAAACCTGCCAGAAGAGTCTCGCCAAGGCCAACGAAACCACTGACCTTAAGCAGCTCATCATTACCGCCTTCAACGCCACGGCCGAGGAGCTCCGCAACAAAATAAAAAACTCAACGCTCTACCACGAGTTGGCCACCGACAACATGACCAAACAGGCCATGGACATCTGCCATGAAGTACTGGGTTACGCTGTGGATGATATAAACCAATCCTCTGTCACGTTGGAGAAGTTTGACCTTAGCAAGCTGAACGATTACGTCTATGACCTCAAGGTTTGGATCTCCGGCACCCTTGCCCACCAGCAAACATGCTTGGACGGGTTCGAGAACTCGACCACCGAGGCTGGGAAGACCATGACTAAGGTTCTGAGCACGTCGTTAGAGCTGAGCAACAACGCGTTGGACATAGTGAACGGTGTCTCGGCCCTCTTCAAGGGTCTTAACTTTACCTCGTTCACCTCCACCACCGACACCCACGCCAACCACCACGCCCCCGCCTCCGCCCCCGCCCACGCCCCCGTCCACGCCCCCGCCGACGCTCCCACCACCGAAAACTCCCCCGCCTCCGCCCCCGCCAACAACAGGAAGCTTCTCTCGGAAGAGCCTTTGGTGGATGGGTTTCCATCGTGGTTGAGTGAAAGGGAGAGAAAGATTCTTGAGGCTGCTGAACCCAAACCGGACGTGGTGGTGGCTCAGGATGGGAGTGGCCAGGTGAAGACAATCCACGAGGCTCTGAAAATGGTACCTAAGAAGAACAAGAAGACTTTTGTGATTTACATCAAGGCCGGTATCTATAGGGAGTATGTTAACTTGAACAAGCACATGTCCTTTGTCACCATGATCGGAGATGGCCCCACCCTCACCAGAATCACAGGCAATAAAAACTACGTCGATGGCATCCAAACCTACAACACAGCAACCGTCGGTGTGAACGCTGAACACTTCATGGCCAAGAACATTGGGTTCGAGAACACGGCTGGACCAGAGAAGCACCAAGCGGTGGCTCTGAGGGTAACGGCGGACAAGGCGGTGTTCTTCAACTGCCACATGGATGGCTACCAAGACACCCTCTATACCCAGTCCAAGCGCCAGTTCTACCGTGACTGCACCGTCAGTGGAACCATCGACTTCGTCTTCGGCGACGCCATCGCCATCTTCCAGAACTGCAGGTTCATCGTGAGGAAGCCAATGTCGACCCAGCAGTGCATGGTCACCGCCGGAGGAAGGACCAAGATCGACAGCCCCAGCGCCCTGGTGTTCCAGAGCTGCATCTTCACCGGCGAACCCGACCTAGTTGCCGTGACCCCCAAGATCTCGTATCTCGGAAGACCCTGGAAGATTTACTCCAAGGTGGTCATCATGGACTCCCAAATCGATGACATCTTCGTCCCCGAAGGATACATGCCCTGGATGGGAACCGCCTTCAAAGATACCAGCACCTACTACGAGTTCAACAACAAGGGTCCTGGTGCCGACACCGCCGGAAGAATCACGTGGCCAGGTTTTAAGGTCATTAACCCTAGCGAGGCTGCCGAGTACTACCCTGGCAAGTTCTATGAGATCGCAAACTCCACTGAGCGTGACGCTTGGATCCTTAATTCTGGTGTACCATACTCCCTCGGCCCACTTCAGCCACCAACCGCTATGCCCGCAGCTTAA 1878 0.5511 MATGFDSAHAKKKKFAILTVSSVLLVAMVAAVAVGIRDGVEIVEEEIGGGGEGEGIVKSQRSVQMICQSAEYKQTCQKSLAKANETTDLKQLIITAFNATAEELRNKIKNSTLYHELATDNMTKQAMDICHEVLGYAVDDINQSSVTLEKFDLSKLNDYVYDLKVWISGTLAHQQTCLDGFENSTTEAGKTMTKVLSTSLELSNNALDIVNGVSALFKGLNFTSFTSTTDTHANHHAPASAPAHAPVHAPADAPTTENSPASAPANNRKLLSEEPLVDGFPSWLSERERKILEAAEPKPDVVVAQDGSGQVKTIHEALKMVPKKNKKTFVIYIKAGIYREYVNLNKHMSFVTMIGDGPTLTRITGNKNYVDGIQTYNTATVGVNAEHFMAKNIGFENTAGPEKHQAVALRVTADKAVFFNCHMDGYQDTLYTQSKRQFYRDCTVSGTIDFVFGDAIAIFQNCRFIVRKPMSTQQCMVTAGGRTKIDSPSALVFQSCIFTGEPDLVAVTPKISYLGRPWKIYSKVVIMDSQIDDIFVPEGYMPWMGTAFKDTSTYYEFNNKGPGADTAGRITWPGFKVINPSEAAEYYPGKFYEIANSTERDAWILNSGVPYSLGPLQPPTAMPAA 625
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03019 625 CDD PMEI-like_3 66 215 - -
Spst3g03019 625 ProSitePatterns Pectinesterase signature 1. 325 344 IPR018040 -
Spst3g03019 625 NCBIfam pectinesterase inhibitor domain 58 212 IPR006501 GO:0004857
Spst3g03019 625 FunFam Pectinesterase 59 214 - -
Spst3g03019 625 Pfam Plant invertase/pectin methylesterase inhibitor 62 209 IPR006501 GO:0004857
Spst3g03019 625 Gene3D - 298 616 IPR012334 -
Spst3g03019 625 SMART PMEI_2 58 209 IPR006501 GO:0004857
Spst3g03019 625 PANTHER PECTINESTERASE 22 604 - -
Spst3g03019 625 Pfam Pectinesterase 300 591 IPR000070 GO:0030599|GO:0042545
Spst3g03019 625 Gene3D Invertase/pectin methylesterase inhibitor family protein 57 213 IPR035513 -
Spst3g03019 625 ProSitePatterns Pectinesterase signature 2. 444 453 IPR033131 -
Spst3g03019 625 SUPERFAMILY Pectin lyase-like 297 592 IPR011050 -
Spst3g03019 625 MobiDBLite consensus disorder prediction 230 270 - -
Spst3g03019 625 FunFam Pectinesterase 4 297 615 - -
Spst3g03019 625 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 62 211 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03019 Spst-Chr3 79833478 79835720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03019 1 616 Carbohydrate Esterase AT3G05610 43.820 0.0 537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03019 K01051 - gmx:100820068 904.82