Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03017 ATGGATAATCCTGGTGTTCCTCTAGGCATGGATAACCCTCATATTCCTTCAGGCATGGATAACCCTCGTTTTCCTTTACCCATGGGTAACCCTCATTTTTCTTTAGTCATGGACAAGTCCAATTTTCCTTCAGACATGGATGCGTTTAAGCAACAGAAGAAAAAGGCAGGGCGGAAGAAGATTGAGATAAAGAAGATCGAGAAGTCTAGCAACAAGCAAGTGACATTCTCGAAAAGGAGAGTGGGGCTGTTCAAGAAAGCGAGTGAATTATGCGTTCTTTGCGATGTCAGTGTAGCCATCATTGTGTTTTCTCCTGCAGGAAAATTGTTCTGCTTCGGCCACCCAGACATGGAGGGCGTTGTTGAAAGCTACGTGAAAGGAGCCCAAGTGTTTGAACCATCGGAGTGGAGAGAGAGATCAGTGTCGTATGAAGAGTGTAACAGGAAATACGAGGAGGCAATGAAGAATTTGGAGGCGGAAAAGAAGAATCTGAGAGAAACTGAAGCTTTGGTTAAAGGGTGGAACAGAAGGTGGTGGGAGGACCCCATTGATCAGATGAGTGAACGTGAGTTGGAACAGTTTATGGTTTCTGTTTATGAGTTGAGGAGAAAATTAACCGAAAGGGGTGGTGAATTGGTGACGCAATCAACGCTATAG 657 0.4475 MDNPGVPLGMDNPHIPSGMDNPRFPLPMGNPHFSLVMDKSNFPSDMDAFKQQKKKAGRKKIEIKKIEKSSNKQVTFSKRRVGLFKKASELCVLCDVSVAIIVFSPAGKLFCFGHPDMEGVVESYVKGAQVFEPSEWRERSVSYEECNRKYEEAMKNLEAEKKNLRETEALVKGWNRRWWEDPIDQMSERELEQFMVSVYELRRKLTERGGELVTQSTL 218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03017 218 Gene3D - 69 135 IPR036879 GO:0003677|GO:0046983
Spst3g03017 218 FunFam Agamous-like MADS-box protein AGL62 68 132 - -
Spst3g03017 218 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 65 112 IPR002100 GO:0003677|GO:0046983
Spst3g03017 218 SUPERFAMILY SRF-like 57 127 IPR036879 GO:0003677|GO:0046983
Spst3g03017 218 ProSiteProfiles MADS-box domain profile. 56 116 IPR002100 GO:0003677|GO:0046983
Spst3g03017 218 PANTHER MADS BOX PROTEIN 58 206 - -
Spst3g03017 218 PRINTS MADS domain signature 93 114 IPR002100 GO:0003677|GO:0046983
Spst3g03017 218 PRINTS MADS domain signature 58 78 IPR002100 GO:0003677|GO:0046983
Spst3g03017 218 PRINTS MADS domain signature 78 93 IPR002100 GO:0003677|GO:0046983
Spst3g03017 218 Coils Coil 140 177 - -
Spst3g03017 218 SMART madsneu2 56 115 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03017 Spst-Chr3 79815193 79815849 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03017 53 206 Type I MADS-box Gene Family AT5G60440 39.264 1.10e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Spst3g03017 SRF-TF 9.5e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03017 - - vra:106766532 278.485