Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03013 ATGAATTCCAACTACGGTCAGTCCAACACGCACAAATCCCCCTCCGTTTCCCTCAACAACTTCAATTTTGATTTCGATCTGGGCATCGGATCCAACCGTCCCAAATCTCTCAACGACCAGAAAAACCCCAACCCTTCCTATTCCACAACCACCACTTCCTATTCCTATTCCCACTCCTCCGCCCAACCCAACAAACAACCCTCATGGACCCACCAACCCGCTCCCAATCAGACCACCGCCCTTCCTGGTGGCCCCCCCTCCATGGTCGGAGACATCTTCGGTAAGAGCTGGGGAACCACTCAACCTTCTCCCGCTTCCAAAAACGTTGGGATCGTTAATAAGAACCCTAATCTCTTTGGAGATTTGGTAAGTTCTGCTTTGGGCCAGGGTTCCAAGTCTTCTTCTACCAATGTTCCTCTCAAAAACGCCACTCCCACCCCCAATAAAACCTCCTTTTCTATGGGAAACATGGTTGATTCTTTGCCCAAAACTGGTGCCGCGCCACAGAGCAGTGCTAGTTGGGCTTCGCCTTCTGGGGGGTTTAGCGTGAATGCTAACAAAACCCCCGACCTTGGGGGTACTTCAATGCGAAACGTGGGTAGTGGAATCGGAAGCAGTTCTAATAACAAGGATCCGTTTAGTTCTTTGTCTGGTTTTGGATTCAAGCAATCTGCTCCTCTTAATTCGGCTGCCAAAGGGCCAAAGGTTGATTCTCGGGATGATGGTTTTGGAGTTTTTCAAAATGCTTCCAAATCGAGCTCGGATGGTTTTGGAGATTTTCAAAATGCTTCAAAACCGAGCTCGGATGGTTTTGGAGATTTTCAAAATGCTTCAAAACCGAGCTCAGCCGCATTTCCATCGGCTGCTTCTCCTGGGATTAGTATCAATTTTGCTGGATCTGCTGCTTCCACCCAGAATTCTGTTCAGGGATCAGGTGTTGGTGGTGATCCAATGGACATGTTTTTCACCGGGACTCCCTCGTCCACGGTTGGAGGTGCTGCTGCGGCCTCTGATGGATTTGGAGGACAGGATGATTGGGGTTTGGATTCGGAGTTTGGTGGGGCAGGCCATGATGTGGGTGGCACCACTACTGAGCTTGAGGGGCTGCCTCCTCCTCCTGCTGGGGTGTCTGGTTCCACTGCCAAAAGCAAGGGGATGGACAATTACAAGCAGGGACAGTTTGCTGATGCTATTAAGTGGCTTTCATGGGCCATTGTTCTTCTAGAGAAAGCTGGGGATGATGCCACCACAATCGAGGTTTTGTCATGCAGGGCTTCATGTTACAAAGAAGTTGGGGAGTATAAAAAGGCAGTGGCAGATTGTACAAAGGTTCTTCAAAATGATGAAACCAATGTATCTGTCCTGGTACAGCGTGCTCTCTTGTACGAGAGTATGGAAAAGTACAAACTTGGTGCCGAAGATCTTAGGACTGTGCTGAAGATTGATCCTAGTAATAGGGTTGCTAGAAGCACCGTTCACCGGTTGGCTAAGATGGCGGAGTAG 1503 0.493 MNSNYGQSNTHKSPSVSLNNFNFDFDLGIGSNRPKSLNDQKNPNPSYSTTTTSYSYSHSSAQPNKQPSWTHQPAPNQTTALPGGPPSMVGDIFGKSWGTTQPSPASKNVGIVNKNPNLFGDLVSSALGQGSKSSSTNVPLKNATPTPNKTSFSMGNMVDSLPKTGAAPQSSASWASPSGGFSVNANKTPDLGGTSMRNVGSGIGSSSNNKDPFSSLSGFGFKQSAPLNSAAKGPKVDSRDDGFGVFQNASKSSSDGFGDFQNASKPSSDGFGDFQNASKPSSAAFPSAASPGISINFAGSAASTQNSVQGSGVGGDPMDMFFTGTPSSTVGGAAAASDGFGGQDDWGLDSEFGGAGHDVGGTTTELEGLPPPPAGVSGSTAKSKGMDNYKQGQFADAIKWLSWAIVLLEKAGDDATTIEVLSCRASCYKEVGEYKKAVADCTKVLQNDETNVSVLVQRALLYESMEKYKLGAEDLRTVLKIDPSNRVARSTVHRLAKMAE 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03013 500 Gene3D Tetratricopeptide repeat domain 378 499 IPR011990 GO:0005515
Spst3g03013 500 MobiDBLite consensus disorder prediction 228 286 - -
Spst3g03013 500 MobiDBLite consensus disorder prediction 1 26 - -
Spst3g03013 500 Pfam Tetratricopeptide repeat 453 485 IPR019734 GO:0005515
Spst3g03013 500 MobiDBLite consensus disorder prediction 33 83 - -
Spst3g03013 500 MobiDBLite consensus disorder prediction 125 209 - -
Spst3g03013 500 SUPERFAMILY TPR-like 382 490 IPR011990 GO:0005515
Spst3g03013 500 ProSiteProfiles TPR repeat profile. 452 485 IPR019734 GO:0005515
Spst3g03013 500 PANTHER OS03G0340700 PROTEIN 1 500 - -
Spst3g03013 500 SMART tpr_5 378 411 IPR019734 GO:0005515
Spst3g03013 500 SMART tpr_5 452 485 IPR019734 GO:0005515
Spst3g03013 500 SMART tpr_5 418 451 IPR019734 GO:0005515
Spst3g03013 500 MobiDBLite consensus disorder prediction 1 104 - -
Spst3g03013 500 MobiDBLite consensus disorder prediction 245 286 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03013 377 500 Calmodulin-binding Proteins AT3G25230 30.370 5.57e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03013 - - pvu:PHAVU_003G107800g 811.601
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03013 3 79790187 79794751 Spst3g03013 3 79790187 79794751 ECH