Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03012 ATGTGTGGGGGTGCTATCATTTCTGATTTCATAGACGTGGATTTCAAGAATGGTCGGAAATTAACCGCTCAAGAACTCTGTTCTGAGATTGACGCTTTCTCTCACTTCCAACCTCTCCACCCCACCTCTTCTTCCAAACCCCAATCATCTCACCCTACAAACAACAAAGTGGAGGCAGCTGAGAAGGTGAAGAAGAAAAGAGTGGTTGCAGAGAAGAGTGGAGCGCGAGTACGGAAGAACGTGTACAGAGGAATCAGGCAAAGGCCATGGGGAAAGTGGGCTGCAGAAATAAGAGACCCACGCAAGGGTGTGCGCGTGTGGCTCGGAACCTTCAACACTGCCGAGGAAGCCGCACGCGCCTACGACGACGCCGCCAAGCGCATCCGCGGAGACAAGGCCAAGCTCAACTTCCCCCACCACCACTACCCACAAGAGTTGACTCAGCCCTGTTATGAACCCACTTTTAATAACCATGACCTCGACTCTCAACTCAAGCACCATATTTCCAACCTCGAATCGTTCCTTGGTTTGGACCATGAACACCATCAAGTGCAACCGCAGCCACAGCCACAACCACTTGCTGAGTGGGACCCGCTCCATGCCGACCTTTGGACGCTCGACGACGTCGTCATGCCCAACCGCCACCTCGTCTGA 654 0.5336 MCGGAIISDFIDVDFKNGRKLTAQELCSEIDAFSHFQPLHPTSSSKPQSSHPTNNKVEAAEKVKKKRVVAEKSGARVRKNVYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDDAAKRIRGDKAKLNFPHHHYPQELTQPCYEPTFNNHDLDSQLKHHISNLESFLGLDHEHHQVQPQPQPQPLAEWDPLHADLWTLDDVVMPNRHLV 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03012 217 PRINTS Ethylene responsive element binding protein signature 82 93 IPR001471 GO:0003700|GO:0006355
Spst3g03012 217 PRINTS Ethylene responsive element binding protein signature 104 120 IPR001471 GO:0003700|GO:0006355
Spst3g03012 217 MobiDBLite consensus disorder prediction 38 56 - -
Spst3g03012 217 PANTHER DNA-BINDING DOMAIN 50 154 IPR044808 GO:0003700|GO:0009873
Spst3g03012 217 SMART rav1_2 81 144 IPR001471 GO:0003700|GO:0006355
Spst3g03012 217 CDD AP2 82 140 IPR001471 GO:0003700|GO:0006355
Spst3g03012 217 Gene3D AP2/ERF domain 81 139 IPR036955 GO:0003700|GO:0006355
Spst3g03012 217 ProSiteProfiles AP2/ERF domain profile. 81 138 IPR001471 GO:0003700|GO:0006355
Spst3g03012 217 MobiDBLite consensus disorder prediction 38 70 - -
Spst3g03012 217 SUPERFAMILY DNA-binding domain 81 139 IPR016177 GO:0003677
Spst3g03012 217 Pfam AP2 domain 81 130 IPR001471 GO:0003700|GO:0006355
Spst3g03012 217 FunFam Ethylene-responsive transcription factor 2 80 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g03012 Spst-Chr3 79785473 79786597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03012 1 210 AP2-EREBP Transcription Factor Family AT3G16770 47.266 1.04e-58 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Spst3g03012 AP2 5.1e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03012 K09286 - gmx:100779626 199.904
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03012 3 79785473 79786597 Spst3g03012 3 79785473 79786597 ECH
Spst3g03012 3 79785473 79786597 Spst9g03138 9 65007737 65009570 PCT