Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g03003 ATGGCCTCAACGGACATCAGAGGGATTTTGACCGCTTTCAATCCTACTCTCGACTTCTTCGCTATCACCGCTGGGGACGGCCGCGTTAAGATATGGGACACGCTGAGTGGCCAGGTGCACACCGAGTTCGCAGATATTGCGTCAACTCATTCAACAACTACCTTACAGCACAAGTCCATTAACGGGCATCTTGCGCTTGATTATACCTGCATCAAGTGGTTCTCCCTCGAAAGAAAGAGGAAACGGAAGCATGTATCCTCGTTGTTAGTACTTGGAACTGGTAGTGGTGATGTTTTGGCACTTGATGTTGCTGCTGGTCAGTTGAGTTGGAGAATTACTGATTGTCATCCTGGAGGTGTGAGAGCCATTGCATCTTCAGCAAACGTGTCAAGCATTTTTACAGCTGGTGCAGATGGGATGGTATGTGTGATAGATTTCATGACAGGAAACCTGTTAGAGAAATTTAAAGCTTCTACCAAGGCAATATCCTGCATGTGTATTTCTCCAGGGAGGCCATCTGCTCTCAAAGTTAATGGGAAGACATTAGCTACTGCAGCTTCACAATTGAAGATTTTTAACTGCTCTAATCACAAAAAGATTCAAAAGTTCGCTGGTCATCCTGGTTCTGTTCGATGCATGGTTTTCACGGAAGATGGCAAGTATATTTTCTCATCTGCTGTTGGTGAAAGATATGTTGCTGTTTGGAGGTTAGATGGTGCTAAAAAGCAGTCAGCTTGTTGTGTTCTCGCGATGGAGCATCCTGCTGTATTTCTTGATAGCAGGTGCATTGATAGTGGGGAGCATGACATGACTAGTATATGTGTTTTGGCCATTTCAGAAATTGGCATTTGTTATTTATGGTTTGGTAATAGTATTGAAGAATTGCGTAGTGCAAAAGCCACAAAAATATCATTATCTTTAGAGGACATGCCCATGAGGAATTACAAAGGAGCTTTGCCATCAATATATGCTGCAAAATTACAAGGCATCCAGAAGGCAGCCTCTGGGCAAGTTTTCCTTGTTTATGGGTTACTTGTGAAACCATCATTTAAAAAAATTCTAGTGCATTCTGGTACAGATGTAAAGTTGAATGTCTCTCATGATGGTTTTCTTCTGCCAACAAGTCAAGCTCTTGTCAAATCTAGGAAGGGGACAAATGCACAAACAGTTACTGCACTTGACCGAGCAAATGCTGAGGATGCATTGCTTCCAATTCCTAAGGTTTTTGATTCCCATGAGCACGAGAAAGAGAAAGCACTTCAAAAATCTTTGGCCAAAGATGTAGATGATGATTTGTGCAGAAGTAGTAATGATGATTCTGTTGTGATGGAAGATGATATGGCCCAAAGTGAGACTGATGGCCTTTGCATGGAGGACCTGCTAAGATCACTAGGGATGCTTTCCAGTGAAAGTGACTATGAATCAAACATTGAACTTTGCTCTAAGTTGTTGAAGGGTATTGATCTGGAAGCTACTATTCCAGCCAAAAAAATAAGAGCAGCTGTTTTGTCTGTGGAGCCAAGGGAAGCATTCATCCTACTGAAAGCATTACTGGCTGCATGGGAATCAAGGTCATCTAGTGGAAAGTATATTCTTCCATGGATATACGGCATATTAGTGAATCATGCTCACAATGTCATTGCTGAGAAATCCGATACGCACACACTTGATTCCTTAGACAAGGAATTTGAATTGTTTTCTGCCACTTTTCAGATCACAAATTCTAGAGCGGAAACACTTCAGCCTTTATTACAATTATCAGGTCGTCTGCAACTGGTGACATCACAGATTGACAAGGCCTCTCAGACTCTAGGCCATCCGGTGCATGAACTCCAAACGGAAGAAAGTGAAGATGAAGAAGAAGATGAATATTATCATGAGGGAGATGATACTTCCGAAATAACTATGTGTCACATACATGGATGGGGATGGATCTTGTTGAAATACGGGTCCATCATCGTATCTGTGCCAGTGTCCGGCATGGTTGTGGCCAGAACTGAATCTGTTAGCGTAGTTAGACAAATGGTGTGTATGGGTGATGGTGCTGCATCAGGTGGTGGCTGTTGGGGCGGTGATTCCAATGGACGGCTTGCTTGTGGTGGCTCTGGTTGTATTGCATCAAGGGTTGTTGCATTTCTTTTTGGTTCTGGTTCTGTTTGTTTAGATGGTGTTAGTTCAATACTAGAGCAAATTGTGGCATTCTTCTTTGTCTTCTTAATTGCTTTGACAACTTGTTCTGGATCTGCCCACCCAACAATTTGCCTTTTTGATCTTCTGTACGCAACCCTTGCAGTCCACTCGGACCTGTATCTGTGTGACACGAGGAAGTGGATTATGGATGGAGAACGTGTGAATGGAATCTGTCTGTACATGCCTCGCACGGGCAAGGAATATGCTAAAGGCAAGAGATGTGGGAAATGCAAGGAATCATTTTGTTTTAGCGGCCAAGGGGAGAGAGATAATTGTTATCGTTGTTTGATAGGTCCTCGGAAGAGGGGTGATGATTCAGGAAAGAATTCGCAGATTCTCCGTGGACATTGA 2541 0.4305 MASTDIRGILTAFNPTLDFFAITAGDGRVKIWDTLSGQVHTEFADIASTHSTTTLQHKSINGHLALDYTCIKWFSLERKRKRKHVSSLLVLGTGSGDVLALDVAAGQLSWRITDCHPGGVRAIASSANVSSIFTAGADGMVCVIDFMTGNLLEKFKASTKAISCMCISPGRPSALKVNGKTLATAASQLKIFNCSNHKKIQKFAGHPGSVRCMVFTEDGKYIFSSAVGERYVAVWRLDGAKKQSACCVLAMEHPAVFLDSRCIDSGEHDMTSICVLAISEIGICYLWFGNSIEELRSAKATKISLSLEDMPMRNYKGALPSIYAAKLQGIQKAASGQVFLVYGLLVKPSFKKILVHSGTDVKLNVSHDGFLLPTSQALVKSRKGTNAQTVTALDRANAEDALLPIPKVFDSHEHEKEKALQKSLAKDVDDDLCRSSNDDSVVMEDDMAQSETDGLCMEDLLRSLGMLSSESDYESNIELCSKLLKGIDLEATIPAKKIRAAVLSVEPREAFILLKALLAAWESRSSSGKYILPWIYGILVNHAHNVIAEKSDTHTLDSLDKEFELFSATFQITNSRAETLQPLLQLSGRLQLVTSQIDKASQTLGHPVHELQTEESEDEEEDEYYHEGDDTSEITMCHIHGWGWILLKYGSIIVSVPVSGMVVARTESVSVVRQMVCMGDGAASGGGCWGGDSNGRLACGGSGCIASRVVAFLFGSGSVCLDGVSSILEQIVAFFFVFLIALTTCSGSAHPTICLFDLLYATLAVHSDLYLCDTRKWIMDGERVNGICLYMPRTGKEYAKGKRCGKCKESFCFSGQGERDNCYRCLIGPRKRGDDSGKNSQILRGH 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g03003 846 Pfam WD domain, G-beta repeat 199 235 IPR001680 GO:0005515
Spst3g03003 846 Gene3D - 10 307 IPR015943 GO:0005515
Spst3g03003 846 SUPERFAMILY WD40 repeat-like 12 239 IPR036322 GO:0005515
Spst3g03003 846 MobiDBLite consensus disorder prediction 604 625 - -
Spst3g03003 846 PANTHER OS03G0300300 PROTEIN 3 633 - -
Spst3g03003 846 SMART WD40_4 105 145 IPR001680 GO:0005515
Spst3g03003 846 SMART WD40_4 3 33 IPR001680 GO:0005515
Spst3g03003 846 SMART WD40_4 196 236 IPR001680 GO:0005515
Spst3g03003 846 SMART WD40_4 148 193 IPR001680 GO:0005515
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g03003 116 237 U-box Gene Family AT2G33340 27.419 9.78e-07 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g03003 K14546 - gmx:100815458 977.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g03003 3 79685997 79697324 Spst3g03003 3 79685997 79697324 ECH