Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02981 ATGAGTGTGGGTTTTTCAAATTCTCCTTTCCCTGTTATTGATCCCTCCGATTTCAACCAAAACATGTCTCTCAGGCCAAATGCCAGAACCGAGGTTCGCCGCAACCGTTACAAGGTTGCAGTTGATGCTGACGAGGGTCGTCGGCGAAGAGAGGATAATATGGTCGAGATCCGAAAGAGCAAGCGCGAAGAGAGCTTGCAGAAGAAGCGTCGTGAAGGTCTCCAAGCTCAACCACAGTTTCCGGCTCCTCTTCAGACTTCCACTGTCGACAAGAAGCTAGAGAGTCTTCCTGCGATGGTTGCTGGAGTTTGGTCGGATGATAATACTCTTCAACTTGAAGCCACCACGCAATTTCGCAAGCTGCTTTCGATTGAACGGAGCCCTCCGATTGAGGAAGTCATTCAAGCTGGTGTTGTTCCTCGTTTTGTTGAGTTTCTTGTCAGGGAGGATTTCCCTCAACTTCAGTTTGAGGCTGCGTGGGCTCTAACAAACATTGCATCTGGGACTTCTGAGAACACTAAGGTGGTCATTGAGCATGGAGCGGTTCCGATATTTGTCAAGCTGCTTAGTTCGCCTAGTGATGATGTTCGGGAGCAGGCAGTTTGGGCTTTGGGAAATGTTGCCGGTGACTCCCCTAGGTGTCGAGATCTGGTGCTCAGCCATGGCGCCCTCACCCCACTATTGGCCCAGTTGAATGAGCATGCAAAACTTTCAATGTTGAGAAATGCCACGTGGACATTATCTAACTTTTGTAGGGGTAAACCACAACCTCCATTTGAGCAGGTGAGACCAGCACTTCCAGCACTTGAGCGCTTGATCTTCTCCAATGATGAAGAGGTTTTGACAGATGCTTGTTGGGCATTATCATATCTTTCTGATGGCACAAATGACAAAATTCAAGCAGTTATCGAGGCAGGTGTATGTCCCAGATTGGTGCAGCTGCTCACTCACCCATCTCCCTCAGTGCTGATTCCTGCTCTTCGAACTGTGGGAAATATTGTGACTGGAGATGACATACAGACTCAGTCTATTATCAATCATGGTGCGCTCCCTTGCCTTTTGAACCTGTTGACAAATAATCATAAAAAAAGCATCAAGAAAGAAGCTTGTTGGACTATATCAAACATTACTGCTGGAAATAAGGAACAGATACAGGCTGTTATTGAAGCTGGTCTAGTTATTCCGCTTGTCAATCTTCTTCAAAATGCTGAGTTTGACATTAAAAAGGAAGCTGCCTGGGCAATTTCAAATGCTACATCTGGCGGAACTCATGACCAGATTAAGTACTTGGTGAATCAGGGTTGCATAAAGCCTCTTTGTGATCTTCTTGGTTGCCCGGACCCAAGAATTGTCACTGTCTGTTTAGAAGGCCTAGAGAATATTCTGAAGGTTGGAGAAGCTGAGAAGAGCCTAGGTAACTCTGGAGATGTCAACTTGTATGCGCAGATGATAGATGATGCTGAGGGATTGGAGAAGATTGAAAACCTCCAGAGTCATGACAACAACGAAATATATGAAAAGGCTGTCAAAATTCTTGAAACATACTGGTTGGAAGATGAAGATGAGACACTACCTTCAGGAGATGGTGCTCAACATGGTTTTGCTTTTGGAAGTGAGCTCCCAGTCCCATCTGGTGGATTCAACTTCAGCTGA 1653 0.4598 MSVGFSNSPFPVIDPSDFNQNMSLRPNARTEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLQKKRREGLQAQPQFPAPLQTSTVDKKLESLPAMVAGVWSDDNTLQLEATTQFRKLLSIERSPPIEEVIQAGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIEHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALTPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRPALPALERLIFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVQLLTHPSPSVLIPALRTVGNIVTGDDIQTQSIINHGALPCLLNLLTNNHKKSIKKEACWTISNITAGNKEQIQAVIEAGLVIPLVNLLQNAEFDIKKEAAWAISNATSGGTHDQIKYLVNQGCIKPLCDLLGCPDPRIVTVCLEGLENILKVGEAEKSLGNSGDVNLYAQMIDDAEGLEKIENLQSHDNNEIYEKAVKILETYWLEDEDETLPSGDGAQHGFAFGSELPVPSGGFNFS 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02981 550 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 264 306 IPR000225 GO:0005515
Spst3g02981 550 Pfam Atypical Arm repeat 478 522 IPR032413 -
Spst3g02981 550 PANTHER IMPORTIN ALPHA 33 520 - -
Spst3g02981 550 Gene3D - 32 71 IPR036975 GO:0006606
Spst3g02981 550 SMART arm_5 337 378 IPR000225 GO:0005515
Spst3g02981 550 SMART arm_5 380 420 IPR000225 GO:0005515
Spst3g02981 550 SMART arm_5 169 209 IPR000225 GO:0005515
Spst3g02981 550 SMART arm_5 126 167 IPR000225 GO:0005515
Spst3g02981 550 SMART arm_5 210 252 IPR000225 GO:0005515
Spst3g02981 550 SMART arm_5 254 293 IPR000225 GO:0005515
Spst3g02981 550 SMART arm_5 295 335 IPR000225 GO:0005515
Spst3g02981 550 SMART arm_5 423 463 IPR000225 GO:0005515
Spst3g02981 550 Pfam Armadillo/beta-catenin-like repeat 211 252 IPR000225 GO:0005515
Spst3g02981 550 Pfam Armadillo/beta-catenin-like repeat 127 167 IPR000225 GO:0005515
Spst3g02981 550 Pfam Armadillo/beta-catenin-like repeat 265 292 IPR000225 GO:0005515
Spst3g02981 550 Pfam Armadillo/beta-catenin-like repeat 380 419 IPR000225 GO:0005515
Spst3g02981 550 Pfam Armadillo/beta-catenin-like repeat 340 378 IPR000225 GO:0005515
Spst3g02981 550 Pfam Armadillo/beta-catenin-like repeat 424 461 IPR000225 GO:0005515
Spst3g02981 550 Pfam Armadillo/beta-catenin-like repeat 169 208 IPR000225 GO:0005515
Spst3g02981 550 Pfam Armadillo/beta-catenin-like repeat 296 334 IPR000225 GO:0005515
Spst3g02981 550 Pfam Importin beta binding domain 33 116 IPR002652 GO:0006606|GO:0061608
Spst3g02981 550 Gene3D - 94 517 IPR011989 -
Spst3g02981 550 MobiDBLite consensus disorder prediction 44 79 - -
Spst3g02981 550 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 180 222 IPR000225 GO:0005515
Spst3g02981 550 SUPERFAMILY ARM repeat 27 522 IPR016024 -
Spst3g02981 550 PIRSF Importin_alpha 23 549 IPR024931 GO:0005737|GO:0006606|GO:0061608
Spst3g02981 550 MobiDBLite consensus disorder prediction 44 71 - -
Spst3g02981 550 FunFam Importin subunit alpha 32 71 - -
Spst3g02981 550 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 137 180 IPR000225 GO:0005515
Spst3g02981 550 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 348 391 IPR000225 GO:0005515
Spst3g02981 550 MobiDBLite consensus disorder prediction 1 28 - -
Spst3g02981 550 ProSiteProfiles IBB domain profile. 17 79 IPR002652 GO:0006606|GO:0061608
Spst3g02981 550 MobiDBLite consensus disorder prediction 1 30 - -
Spst3g02981 550 FunFam Importin subunit alpha 94 517 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02981 Spst-Chr3 79476016 79479806 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02981 152 412 U-box Gene Family AT3G46510 25.954 2.59e-12 67.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02981 K15042 - gmx:100792804 993.801