Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02972 ATGTCGAATAACTTGGCCGGGCAACTTGTTGGTTCAGAGATACATGGATTCCACACATTGCAAGATTTGGATGTGGGGAGCATTATGGAGGAAGCAAGAACCAGATGGCTTCGTCCCAATGAAATTCATGCCATGCTGTGTAATTACAAGTATTTTACCATTAATGTCAAGCCAGTGAATTTGCCAAAAAGTGGTACTATTGTCTTATTTGATCGCAAGATGCTTAGGAACTTTCGAAAAGATGGGCACAACTGGAAAAAGAAAAAAGATGGGAAAACTGTTAAAGAAGCTCATGAGCACTTAAAAGTTGGTAATGAAGAAAGGATACATGTATATTATGCACATGGTCAAGATAATCCAAATTTTGTGCGAAGATGTTATTGGCTGCTTGATAAGAGTATGGAACACATAGTCCTTGTTCATTACCGTGAAACACAAGAGATGCAAGGTTCTCCCGTCACTCCTGTAAATTCACACTCCAGTTCTGTCTCTGATCCTCTTGCACCGTGGGTTGTATCAGAAGAAATAGATTCAGGGACCAAAACCATATATGCTGGTGACATGAGTGACAATGTTAAAGACAAAAGTCATGAACTGAGACTTCATGAGATTAATACACTTGAGTGGGATGACCTAGTGGATGCAAATGATCATAATCCCTCTACCCTACCTAATGGAGGCACTGTTCCATATTTTAATCAGCAAGATCAAACTTTACTGAATGACAGTTTCTGCAATGTAGTCAACAATCTATCTGCAGAAAATTCTTCTTTTAATAGTCTTCTTCCTCAGCAAATTGCTGGGAGCAACATTGTTCCTTACAGTTTTTCAGAGAGTTCTAAGCTTCAGATGATGGGCAATCAAGCAAATCCAAACGAGCAGAGGAACAATACTGTTTCCTTAAGTGGTGTTGGTACCTTGGACCCTTTGGTCAATGATAGATTGCAAAGTCAGGACAGCTTTGGAATGTGGGTGAACCACATAATGTCTAATTCACCATGTTCAGTAGATGACCCAGCTCTTGAATCACCAGTTTCATCCGTTCATGAATCATATTCGTCTATGGTAATGGATGATCAGCAATTTTCTCAGCCAGAACAAGTATTTACTATCACTGATGTATACCCTACATGGGTGTCTTCCACTGAGAAATCAAAGGTCCTGGTGACTGGATTCTTTCATAAGGATTATATGCACCTTTCAAAGTCCAATCTATTATGTGTCTGTGGTGATGTTAGCGTTCCTGCAGAAATTGTTCAGGTTGGGGTCTACCGGTGCTGGGTATCACCACATTCTCCAGGAATCGTAAATCTCTACTTGAGTTTTGATGGCCATAAGCCTATTAGCCAAGTTGTTAATTTTGAATATCGTACTCTTGTCTTGCATGATCCTACAGCTTCAATGGAAGAGAATAGCAATTGGGATGAATTTCGACTACAAATGAGGCTTTCTTATTTGCTTTTTGCTAAACAATTGAGCCTGGATGTTATCTCCAGTAAAATATCACCCAATAGAGTTAAGGAGGCTAGGCAATTCGCACTTAAAACATCATTTATTTCCAATAGTTGGCAGTATTTAATCAAGTCAACCGAAGACAACCTGATTCCATTTTCACAAGCAAAAGATGGTCTATTTGGAATTGCATTGAAAAACAGACTAAGGGAGTGGCTTTTGGAAAGAATTGTTTTAGGTTATAAGACTACTGAATATGATGCTCATGGACAAAGTGTCATTCATTTGTGTGCAATTTTGGGATATACTTGGGCTGTTTCCTTATTTTCATGGTCAGGCTTGTCGCTGGATTTCCGTGATAGATTTGGATGGACAGCTCTTCATTGGGCAGCATATTGTGGAAGGGAGAAAATGGTTGCAACTCTGCTGTCTGCTGGGGCAAAGTCAAATTTGGTTACTGATCCTACGCCACAAAATCCTGGTGGTTGCACTGCTGCCGATCTTGCTTATATGAAGGGTCATGATGGTCTAGCAGCTTATCTTTCAGAAAAATCTTTGGTTCAGCACTTTAATGACATGAGCTTAGCTGGAAATATCAGTGGCTCCTTGGAAACTAGCACAACTGATGTAGTCAATTCTGCAAATCTTACTGATGACCAGCAGAACCTGAAAGATACATTGGCAGCTTACCGAACTGCTGCTGAAGCAGCTGCTCGCATACAAGCTGCATTTAGGGAACACAATCTAAAACTGAGAACTGACGCTGTTGTGTCTTCCAATCCAGAGGCTGAAGCACGCCAAATAGTTGCAGCAATGAAAATTCAGCATGCCTTTAGGAACTACGAGACAAAGAAAATGATGGGAGCTGCTGCTCGCATTCAGTGTACATTCCGTACATGGAAGATTCGTAAAGAATTTCTCCTGATGCGCCGGCAGGCTGTTAAAATTCAAGCTGCTTTCAGGTGCTTTCAACTGCGCAAGCATTATCGGAAAATTCTTTGGTCTGTTAGCGTGGTTGAGAAAGCAGTGCTGCGATGGCGTTTGAAGAGAAGGGGCTTCCGAGGGCTCCAGGTCAGAACTGTTGAAGTGGGAACCGGAGATCACGACCAGGAAAGTGTTGTTGAGGAGGAATTCTTTCGGACAGGTAGGAAACAGGCTGAAGAACGTGTTGAGAGATCTGTAGTGCGGGTGCAGGCTATGTTCCGATCGAAGAAAGCACAAGAAGAGTATAGGAGGATGAAATTGGCCCTAGATCAAGCGAAGGTGGAACGGGAATACGAACAACTTCTTAGTACTGAAGTTGACATGGAACTGAAGGCATAA 2775 0.4159 MSNNLAGQLVGSEIHGFHTLQDLDVGSIMEEARTRWLRPNEIHAMLCNYKYFTINVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNEERIHVYYAHGQDNPNFVRRCYWLLDKSMEHIVLVHYRETQEMQGSPVTPVNSHSSSVSDPLAPWVVSEEIDSGTKTIYAGDMSDNVKDKSHELRLHEINTLEWDDLVDANDHNPSTLPNGGTVPYFNQQDQTLLNDSFCNVVNNLSAENSSFNSLLPQQIAGSNIVPYSFSESSKLQMMGNQANPNEQRNNTVSLSGVGTLDPLVNDRLQSQDSFGMWVNHIMSNSPCSVDDPALESPVSSVHESYSSMVMDDQQFSQPEQVFTITDVYPTWVSSTEKSKVLVTGFFHKDYMHLSKSNLLCVCGDVSVPAEIVQVGVYRCWVSPHSPGIVNLYLSFDGHKPISQVVNFEYRTLVLHDPTASMEENSNWDEFRLQMRLSYLLFAKQLSLDVISSKISPNRVKEARQFALKTSFISNSWQYLIKSTEDNLIPFSQAKDGLFGIALKNRLREWLLERIVLGYKTTEYDAHGQSVIHLCAILGYTWAVSLFSWSGLSLDFRDRFGWTALHWAAYCGREKMVATLLSAGAKSNLVTDPTPQNPGGCTAADLAYMKGHDGLAAYLSEKSLVQHFNDMSLAGNISGSLETSTTDVVNSANLTDDQQNLKDTLAAYRTAAEAAARIQAAFREHNLKLRTDAVVSSNPEAEARQIVAAMKIQHAFRNYETKKMMGAAARIQCTFRTWKIRKEFLLMRRQAVKIQAAFRCFQLRKHYRKILWSVSVVEKAVLRWRLKRRGFRGLQVRTVEVGTGDHDQESVVEEEFFRTGRKQAEERVERSVVRVQAMFRSKKAQEEYRRMKLALDQAKVEREYEQLLSTEVDMELKA 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02972 924 Gene3D - 547 676 IPR036770 -
Spst3g02972 924 Gene3D Immunoglobulins 364 459 IPR013783 -
Spst3g02972 924 Coils Coil 923 924 - -
Spst3g02972 924 SUPERFAMILY Ankyrin repeat 555 670 IPR036770 -
Spst3g02972 924 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 712 821 IPR027417 -
Spst3g02972 924 Pfam Ankyrin repeats (3 copies) 555 634 IPR002110 GO:0005515
Spst3g02972 924 ProSiteProfiles IQ motif profile. 793 821 IPR000048 GO:0005515
Spst3g02972 924 Gene3D - 767 817 - -
Spst3g02972 924 FunFam Calmodulin-binding transcription activator 5 365 461 - -
Spst3g02972 924 SMART iq_5 873 895 IPR000048 GO:0005515
Spst3g02972 924 SMART iq_5 792 814 IPR000048 GO:0005515
Spst3g02972 924 SMART iq_5 769 791 IPR000048 GO:0005515
Spst3g02972 924 SMART CG_1_2 28 146 IPR005559 GO:0003677
Spst3g02972 924 Coils Coil 887 907 - -
Spst3g02972 924 ProSiteProfiles IQ motif profile. 875 903 IPR000048 GO:0005515
Spst3g02972 924 FunFam calmodulin-binding transcription activator 5 536 676 - -
Spst3g02972 924 SUPERFAMILY E set domains 370 457 IPR014756 -
Spst3g02972 924 ProSiteProfiles Ankyrin repeat region circular profile. 606 634 - -
Spst3g02972 924 ProSiteProfiles Ankyrin repeat profile. 606 638 IPR002110 GO:0005515
Spst3g02972 924 SMART ANK_2a 606 635 IPR002110 GO:0005515
Spst3g02972 924 SMART ANK_2a 645 674 IPR002110 GO:0005515
Spst3g02972 924 Pfam CG-1 domain 31 144 IPR005559 GO:0003677
Spst3g02972 924 ProSiteProfiles IQ motif profile. 770 799 IPR000048 GO:0005515
Spst3g02972 924 ProSiteProfiles CG-1 DNA-binding domain profile. 25 151 IPR005559 GO:0003677
Spst3g02972 924 Pfam IQ calmodulin-binding motif 795 814 IPR000048 GO:0005515
Spst3g02972 924 Pfam IQ calmodulin-binding motif 773 790 IPR000048 GO:0005515
Spst3g02972 924 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 24 902 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02972 Spst-Chr3 79395888 79403218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02972 28 907 CAMTA Transcription Factor Family AT3G16940 54.762 0.0 941
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CAMTA Spst3g02972 CG-1 1.8e-45 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02972 K21596 - gmx:100793970 1636.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02972 3 79395888 79403218 Spst3g02972 3 79395888 79403218 ECH