Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02949 ATGGGAACTCCACCAACGGATGAACTCGTGAAGAAGATCCAACAGTTAGAGGAAGGACAAGAGCACCTGAAGCAAGAAATGTCAAAGCTCAAGCTCTCCGATGTGAGACACGGCCATCGCCAGAGGTCGCACTCCGTCTCTCCGCAGCGTTCCAGATTGGGCGCTCCGCCGAGGAGGCGGAGCGATGCACCAGCGGCTGCGTGGAAGAGAGGTTCGTGTTCCTTTAAACAATCCTCGCCGCTGCAGAGAGAGAGCCGTGGCGGCGGCGATCCTCAAATTCACGGCAGCGGTGGCGGAGGAGGGTTAGGAGTAGGAGGAGTAGGAGAAGGTGCTACTCCGCGTTGCAGTCCTTCCGCCGTGAATTTCACGGAACGGCAGTATCTTAATATTTTGCAGTCAATGGGACAGTCTGTTCATGTATTGGATCTTAACTGTCGCATAAGATACTGGAACCGTAGTGCGGAAAATCTGTATGGTTATACAGCAGAGGAAGCTCTAGGGCGGGATGGAATTGAGCTGCTTGTAGACCCTAGGGATTTGGGCTTGGCCAATGATACAGTGAACCGTGTGATGATGGGAGAGAACTGGACAGGGCAATTTCCGGTCAAGAATAAGATGGGAGAGAAGTTCTTAGCTGTAGCGACTAATACACCTTTCTATGATGATGATGGAAGCTTAGTTGGGATAATTTGTGTCTCAAGTGATTCACGGCCCTTTCTTGAAATGAAAGTTCCAATGTCTGGTGTAAGGAACACTGAGTCAGATTTGGACTCGGGTGGAACTCGATCTAAAAGTAGCATTTCGAATAAACTTGGCATTGACACTCAACAGCCACTTCAAGTTGCTCTTGCTTCGAAAATTTCAAATTTGGCATCAAAGGTGAGTAACAAAGTAAAGTCAAGGATCTGGACGGGAGAAAATAATGTGGATCGTGAAGGTGGGAGCGGTGAAAGTCATCATTCTGAGCATAGTTTGTCGGAATCAGTTCTTTCGGACCAGAGAGAGGATGCTAATTCCAGTGGAGCTAGCACCCCCAGAGGTGATGTGCCACCATCCCATTTTGGTGTGTTTACTCATGGTGAAGAAAAAACCCAGGGAAAATCTTCGAAAGAGTCTGGTAATGAGAATGAAGTAAAATCAATTCACAAAATCATACCTGCTAAGGCTGAAGCCTGGATTCAAAGGAAAACATTATCATGGCCATGGAGAACAAGGGATCGAGAAGGTCCAGAAGTATCAGAGGAAAGGAATGTTCGTGTCAGTGGGCCCTGGAGACAGAATGATCAAGAAAATGAATCAGTTAATCTGAAGATTCTTTCTTCTGGCTTGAAGCAAGAAAGCACGGGTGGGGAAAGTAATCGCCCTAATAATAATGAAGCTTCAGGATCCTGGTCCTCCTTTAATGTTAACAGCACAAGTAGTGCCAGCAGCTGTGGGAGTGCTGGCAGTTGTGCTGTCAATAATAAAGTGGATGTGGACACTGATTGCTTGGATTATGAAATTTTGTGGGAGGACCTGACAATTGGAGAACAAATTGGGCAAGGTTCTTGTGGAACTGTATATCATGCTCTGTGGTATGGATCAGATGTTGCCGTCAAAGTTTTCTCGAAGCAAGAATATTCAGATGATGTGATACTGTCCTTCAGACAAGAGGTGTCTGTCATGAAAAGGCTGCGACATCCAAATATTCTTCTCTTTATGGGGGCGGTGACTTCACCTCAACGTCTCTGCATCGTGACAGAGTTTCTCCCACGTGGAAGCTTGTGCCGCTTGTTACACAGAAACACATCTAAACTTGACTGGAGACGGCGAGTTCATATGGCCTTGGATATTGCACGGGGCATAAATTATCTTCATCATTCTAACCCACCTATCATCCACAGAGATTTGAAATCTTCAAATCTTCTAGTTGATAGGAACTGGACTGTGAAGGTTGGTGATTTTGGTCTTTCACGAATTAAGCATGAAACATATCTCACAACCAAGACCGGAAGGGGCACGCCTCAATGGATGGCACCAGAAGTTCTTCGTAATGAACCCTCCGATGAGAAATCTGACGTTTACAGCTTTGGAGTAATATTATGGGAAATTGCAACTGAAAAGATACCTTGGGATAATCTCAACTCAATGCAGGTGATTGGAGCTGTAGGATTCATGAATCAACGGCTTGAAATTCCCAAAAATGTCGATCCACGGTGGGCATCTATAATTGAGAGCTGCTGGCACAGCGACCCAGCATGCCGGCCAACGTTCCCCGAACTGCTTGAAAGGCTTAGAGAGCTGCAAAAACACATAGCCGATTTGAGTCCATCATCAACATTTGCCAAGTGGCATCTTGATGTTTCATCAATTGATTGGTGGTTTTGGATGTTTGGAGTCTTGTCAATTGGATCTATTACCACCCGCATTGTACTTTTTCTACGCAACTGTTTGCGCCACTATTTCAAAGTTGTACAGAAGTTTAGGACATCAGACATCCTTTTAAGGAACCGTTCAGAATTTGCTTGGCCTGTTTTCGAATCCCAGAATAAATTTTCAATTGCTGCTGCATTCTATTGGCCATCCCTTTTTGTTAACATTAACCGAACTGTTTAA 2595 0.4543 MGTPPTDELVKKIQQLEEGQEHLKQEMSKLKLSDVRHGHRQRSHSVSPQRSRLGAPPRRRSDAPAAAWKRGSCSFKQSSPLQRESRGGGDPQIHGSGGGGGLGVGGVGEGATPRCSPSAVNFTERQYLNILQSMGQSVHVLDLNCRIRYWNRSAENLYGYTAEEALGRDGIELLVDPRDLGLANDTVNRVMMGENWTGQFPVKNKMGEKFLAVATNTPFYDDDGSLVGIICVSSDSRPFLEMKVPMSGVRNTESDLDSGGTRSKSSISNKLGIDTQQPLQVALASKISNLASKVSNKVKSRIWTGENNVDREGGSGESHHSEHSLSESVLSDQREDANSSGASTPRGDVPPSHFGVFTHGEEKTQGKSSKESGNENEVKSIHKIIPAKAEAWIQRKTLSWPWRTRDREGPEVSEERNVRVSGPWRQNDQENESVNLKILSSGLKQESTGGESNRPNNNEASGSWSSFNVNSTSSASSCGSAGSCAVNNKVDVDTDCLDYEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFRQEVSVMKRLRHPNILLFMGAVTSPQRLCIVTEFLPRGSLCRLLHRNTSKLDWRRRVHMALDIARGINYLHHSNPPIIHRDLKSSNLLVDRNWTVKVGDFGLSRIKHETYLTTKTGRGTPQWMAPEVLRNEPSDEKSDVYSFGVILWEIATEKIPWDNLNSMQVIGAVGFMNQRLEIPKNVDPRWASIIESCWHSDPACRPTFPELLERLRELQKHIADLSPSSTFAKWHLDVSSIDWWFWMFGVLSIGSITTRIVLFLRNCLRHYFKVVQKFRTSDILLRNRSEFAWPVFESQNKFSIAAAFYWPSLFVNINRTV 864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02949 864 CDD STKc_MAP3K-like 512 758 - -
Spst3g02949 864 PRINTS Tyrosine kinase catalytic domain signature 729 751 IPR001245 GO:0004672|GO:0006468
Spst3g02949 864 PRINTS Tyrosine kinase catalytic domain signature 619 637 IPR001245 GO:0004672|GO:0006468
Spst3g02949 864 PRINTS Tyrosine kinase catalytic domain signature 685 707 IPR001245 GO:0004672|GO:0006468
Spst3g02949 864 PRINTS Tyrosine kinase catalytic domain signature 580 593 IPR001245 GO:0004672|GO:0006468
Spst3g02949 864 PRINTS Tyrosine kinase catalytic domain signature 666 676 IPR001245 GO:0004672|GO:0006468
Spst3g02949 864 ProSiteProfiles PAS repeat profile. 123 194 IPR000014 -
Spst3g02949 864 MobiDBLite consensus disorder prediction 244 271 - -
Spst3g02949 864 Gene3D Phosphorylase Kinase; domain 1 499 583 - -
Spst3g02949 864 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 196 762 - -
Spst3g02949 864 MobiDBLite consensus disorder prediction 420 465 - -
Spst3g02949 864 FunFam PAS domain-containing protein tyrosine kinase 499 583 - -
Spst3g02949 864 SMART serkin_6 506 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g02949 864 Gene3D Transferase(Phosphotransferase) domain 1 585 770 - -
Spst3g02949 864 Pfam PAS fold 126 233 IPR013767 GO:0006355
Spst3g02949 864 MobiDBLite consensus disorder prediction 251 271 - -
Spst3g02949 864 Coils Coil 6 33 - -
Spst3g02949 864 ProSiteProfiles Protein kinase domain profile. 506 765 IPR000719 GO:0004672|GO:0005524|GO:0006468
Spst3g02949 864 FunFam PAS domain-containing protein tyrosine kinase family protein 584 772 - -
Spst3g02949 864 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672|GO:0006468
Spst3g02949 864 MobiDBLite consensus disorder prediction 406 465 - -
Spst3g02949 864 MobiDBLite consensus disorder prediction 331 346 - -
Spst3g02949 864 SMART pas_2 125 192 IPR000014 -
Spst3g02949 864 MobiDBLite consensus disorder prediction 26 115 - -
Spst3g02949 864 CDD PAS 134 235 IPR000014 -
Spst3g02949 864 MobiDBLite consensus disorder prediction 305 379 - -
Spst3g02949 864 MobiDBLite consensus disorder prediction 363 379 - -
Spst3g02949 864 Gene3D PAS domain 135 238 - -
Spst3g02949 864 NCBIfam PAS domain S-box protein 124 235 IPR000014 -
Spst3g02949 864 Pfam Protein tyrosine and serine/threonine kinase 506 758 IPR001245 GO:0004672|GO:0006468
Spst3g02949 864 SUPERFAMILY PYP-like sensor domain (PAS domain) 129 232 IPR035965 -
Spst3g02949 864 MobiDBLite consensus disorder prediction 312 330 - -
Spst3g02949 864 SUPERFAMILY Protein kinase-like (PK-like) 498 787 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02949 Spst-Chr3 79149149 79155866 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02949 1 763 MAP Kinase Kinase Kinase AT3G06620 58.430 0.0 900
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Spst3g02949 PK_Tyr_Ser-Thr 2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02949 - - pvu:PHAVU_003G114400g 1360.13