Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02940 ATGCTCCTGACATTGATGAATCTGTTCTCGCTGTGTTGGAAGCCGTTCGGGCGTGATGCTGATCGAATCGATTCCATTGGAGTAATCGGGAGCACCTTCGCCGGGAGAGAAGGCAAAGACGGCTTACTGTGGTTCCGGGACGTTGGGAAATATGCCTCCGGCGATTTCTCCATGGCCGTCGTTCAGGCCAACCAGGTTCTCGAAGACCAGAGCCAGATCGAGTCCGGTCCTCTTGGCACCTTCGTTGGCATATACGATGGTCACGGAGGACCCGACGCCTCCAGATACGTTTGCGATCACTTGTTTCGCCATTTTCAAGCAACATCGGCTGAGTCACGCGGGGAGGTGACAACGGAGACAATTGAAAGGGCATTTCGCCAAACGGAAGAGGGGTACACGGCCCTTGTGTCAGGTTCCTGGAATGCTCGACCTCAAATTGCAAGTGCTGGGACCTGTTGTCTAGTTGGAGTGATATTTCAGCAGACACTCTATGTGGCAAACGTTGGCGATTCCCGTGTTGTATTGGGTAAGAAAGTTGGCAACACTGGAGGTATGGCTGCAATTCAGCTGTCCACGGAACACAATGCAAATCTTGAGTCTGTTAGACAGGAGCTTAAAGAATTACACCCTCATGATCCTCAAATTGTTGTCCTCAAACATGGAGTGTGGAGAGTAAAAGGCATTATTCAGGTTTCTAGATCTATAGGTGACGTATATTTAAAACATGCTCAATTTAACCGGGAACCACTTAATGCAAAATTCAGACTTCCTGAACCGATGCACATGCCCATCTTGAGTGCTAATCCCAGTATTCTTTCTCATCCTCTCCAACCAAATGATTCCTTCCTTATATTTGCATCAGATGGTTTATGGGAGCACTTGAGTAATGAAAAAGCTGTGGATATTGTAAACAGCAATCCACATGCGGGTAGTGCAAAGAGACTTATCAAGGCTGCCCTCCACGAAGCAGCAAGAAAACGAGAAATGAGGTATTCAGATCTGCGCAAGATTGACAAGAAGGTTCGACGCCATTTTCATGATGATATATCTGTTATTGTTTTATTCTTAAATCACGACCTTATTTCCAGAGGCACAGTGCTAGACCCGGCAATTTCACTTCGAAGCGCTCTCGATCACTGA 1140 0.4719 MLLTLMNLFSLCWKPFGRDADRIDSIGVIGSTFAGREGKDGLLWFRDVGKYASGDFSMAVVQANQVLEDQSQIESGPLGTFVGIYDGHGGPDASRYVCDHLFRHFQATSAESRGEVTTETIERAFRQTEEGYTALVSGSWNARPQIASAGTCCLVGVIFQQTLYVANVGDSRVVLGKKVGNTGGMAAIQLSTEHNANLESVRQELKELHPHDPQIVVLKHGVWRVKGIIQVSRSIGDVYLKHAQFNREPLNAKFRLPEPMHMPILSANPSILSHPLQPNDSFLIFASDGLWEHLSNEKAVDIVNSNPHAGSAKRLIKAALHEAARKREMRYSDLRKIDKKVRRHFHDDISVIVLFLNHDLISRGTVLDPAISLRSALDH 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02940 379 SUPERFAMILY PP2C-like 65 357 IPR036457 -
Spst3g02940 379 FunFam Probable protein phosphatase 2C 42 46 364 - -
Spst3g02940 379 Pfam Protein phosphatase 2C 79 326 IPR001932 -
Spst3g02940 379 ProSiteProfiles PPM-type phosphatase domain profile. 55 356 IPR001932 -
Spst3g02940 379 PANTHER PROTEIN PHOSPHATASE 53 354 IPR015655 GO:0004722|GO:0006470
Spst3g02940 379 SMART PP2C_4 42 354 IPR001932 -
Spst3g02940 379 CDD PP2Cc 56 356 IPR001932 -
Spst3g02940 379 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169
Spst3g02940 379 Gene3D - 47 364 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02940 Spst-Chr3 79064118 79067777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02940 1 376 PP2C-type Phosphatase Gene Family AT4G38520 58.701 6.75e-160 453
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02940 K01102 - gmx:100790813 716.457
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02940 3 79064118 79067777 Spst3g02940 3 79064118 79067777 ECH
Spst3g02940 3 79064118 79067777 Spst6g01532 6 14394234 14399520 PCT