Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02937 ATGGAACCAGGAAACCCTTCGTCGCCGGATCCCGAATCGCCAACCTCTGCTTCCGTTGGTTTCAACACCGACCAGATTCCTCACACCCACACGAGCCGTGCCTCCGAGGACGACGAGGCTTCCGTTGACCCCGACATCATACGAGATGATCTTGAAGAACAACCCGAGGAAGAAGAAGATGGAGAGGATCTTTACAATGACAATTTCATGGATGACTATCGGAGAATGGATGAGGCTGACCAGTTCGAATCGTTCGGGCTGGATGACTCGATGGAAGATGACAGGGACTTTGATCGGATAATGGAGGATCGAAGGGCTGCGGAGATTGAAATCGACGCACGTGAGGGTCGCGTTACCAATCGCAGCAAGCTTCCCCAGCTTCTTCACGACCAAGATACAGATGATGACAGTCACAGGCCTTCTAAAAGGGCCCGACCTGATTTCAGAGCTTCTTTACCAAGTGATGATGATCTGCAAAGTTCACCTGGAAGGTCACAACGAGGGCACTCAAGAGAGGATGTTCCTATGACTGATCAAACTGAGGATGATCGAGATGATGATGAATTTGATGACGGATATGAGATGTATCACGTACAAGGAACACTTCGGGAGTGGGTTACAAGAGATGAAGTGCGCCGCTTCATAGCCAGGAAATTCAAGGACTTCCTACTCACGTATGTTAATCCGAAAAATGAACACCGAAACAAGGAATATGTTTGGCTGATTAATGAGATGGTGTCAGCTAGTAAGTGCAGTTTGGAGATAGATTACAAACAATTTATCTATGTTCATCCCAACATCGCCATTTGGCTAGCTGATGCGCCTCAGTCTGTCTTAGAAGTAATGGAAGATGTTACCAAAAGCGTTGTCTTTGAATTACATCCAAATTACAGAAATATACATCAAAAGATTTATGTACGCATAACCAACTTGCCAGTTTATGATCAGATTCGAAATATAAGGCAAATCCACTTGAATACAATGATCCGAATTGGGGGAGTAGTAACTAGGCGCTCTGGAGTTTTCCCCCAGTTGCAGCAGGTGAAGTATGATTGTAACAAATGTGGGGCAATTTTGGGACCTTTTTTCCAGAATTCTTATTCAGAGGTGAAAGTTGGATCCTGTCCTGAGTGCCAGTCAAAAGGACCATTCACTGTCAACATTGAACAGACAATTTATAGGAATTTTCAGAAGCTTACCCTCCAAGAAAGTCCAGGAATAGTTCCTGCAGGTCGACTCCCAAGATACAAGGAAGTCATTCTATTGAATGATCTTATTGACTGTGCTCGCCCTGGGGAAGAGATTGAGGTCACTGGTGTTTATACCAATAATTTTGATTTATCCCTAAACACAAAAAATGGGTTTCCAGTGTTTGCCACTGTTGTTGAGGCAAATTATGTTACGAAAAAGCAAGACCTCTTCTCTGCCTACAAACTTACACAGGAAGACATAGCGGAGATTGAAAATTTGGCCAAAGACCCTCGAATAGGAGAAAGGCTTGTAAAGTCTATTGCTCCATCAATCTATGGTCACGATGACATAAAAACTGCAATCGCTTTAGCTATGTTTGGAGGCCAAGAGAAAAATGTTGAAGGAAAGCATCGACTGCGAGGAGATATAAATGTTCTTCTTCTTGGTGATCCGGGAACAGCAAAGTCTCAGTTTCTCAAGTACGTAGAAAAAACTGGACAGAGAGCCGTATACACTACTGGCAAAGGGGCTTCTGCCGTGGGTCTCACAGCTGCAGTTCACAGGGATCCAGTCACACGGGAATGGACTCTTGAGGGAGGAGCCCTTGTTCTAGCCGACAAGGGAATTTGTCTTATTGATGAGTTTGACAAGATGAATGACCAAGATAGGGTGAGTATCCACGAAGCCATGGAGCAGCAGAGTATAAGCATATCAAAAGCTGGAATTGTTACATCTCTTCAGGCACGCTGTTCTGTTATTGCTGCTGCAAATCCTATTGGAGGAAGATATGATTCCTCAAAAACATTCTCTCAAAATGTTGAATTGACAGATCCTATTATTTCTCGTTTTGATGTCCTCTGCGTTGTTAAGGATGTTGTTGATCCTGTCACGGATGAAATGCTTGCAACTTTTGTCGTTGACAGTCACTTCAAGTCACAACCCAAGGGTGCTAACCAAGATGATAAGTCCTTTAGTGAGTCCCAAGATGTCCATGCATCTGCCGTGCAAGATGATCCCGAGATACTTCCGCAGGATCTACTGAAGAAGTACATTACATATGCCAAGTTGAATATTTTTCCAAGGTTACAAGATGCCGATATGGATAAACTGTCTCATGTCTATGCTGAATTGCGGAGGGAATCCTCACACGGACAAGGAGTCCCTATTGCTGTAAGGCATATTGAATCTATGATAAGGATGTCTGAAGCTCATGCGAGAATGCATCTCAGACAGCATGTTACACAAGAGGATGTGGACATGGCAATTCGTGTTCTACTTGAATCATTCATTTCCACACAAAAGTTTGGGGTGCAGAAGGCTCTTCAAAAGAGCTTTCGAAAGTACATGACTTTCAAGAAGGACTACAATGAACTGCTCCTTTATATTCTCCGCGAGCTTGTAAAAAATGCTCTGCATTTCGAAGAAATTGTCACCGGATCTACTTCAGGTCTAACTTCTGTGGATGTAAAAGTAGATGATCTGTACAACAAGGCTCAAGAGCATGACATTTATGATCTGAAACCATTCTTTAATAGCAGCCAGTTTACACGGGCCAATTTTGTATTGGATGAAGAAACGAGAGTCATCAGACATCGTCTGGTTTGA 2796 0.4353 MEPGNPSSPDPESPTSASVGFNTDQIPHTHTSRASEDDEASVDPDIIRDDLEEQPEEEEDGEDLYNDNFMDDYRRMDEADQFESFGLDDSMEDDRDFDRIMEDRRAAEIEIDAREGRVTNRSKLPQLLHDQDTDDDSHRPSKRARPDFRASLPSDDDLQSSPGRSQRGHSREDVPMTDQTEDDRDDDEFDDGYEMYHVQGTLREWVTRDEVRRFIARKFKDFLLTYVNPKNEHRNKEYVWLINEMVSASKCSLEIDYKQFIYVHPNIAIWLADAPQSVLEVMEDVTKSVVFELHPNYRNIHQKIYVRITNLPVYDQIRNIRQIHLNTMIRIGGVVTRRSGVFPQLQQVKYDCNKCGAILGPFFQNSYSEVKVGSCPECQSKGPFTVNIEQTIYRNFQKLTLQESPGIVPAGRLPRYKEVILLNDLIDCARPGEEIEVTGVYTNNFDLSLNTKNGFPVFATVVEANYVTKKQDLFSAYKLTQEDIAEIENLAKDPRIGERLVKSIAPSIYGHDDIKTAIALAMFGGQEKNVEGKHRLRGDINVLLLGDPGTAKSQFLKYVEKTGQRAVYTTGKGASAVGLTAAVHRDPVTREWTLEGGALVLADKGICLIDEFDKMNDQDRVSIHEAMEQQSISISKAGIVTSLQARCSVIAAANPIGGRYDSSKTFSQNVELTDPIISRFDVLCVVKDVVDPVTDEMLATFVVDSHFKSQPKGANQDDKSFSESQDVHASAVQDDPEILPQDLLKKYITYAKLNIFPRLQDADMDKLSHVYAELRRESSHGQGVPIAVRHIESMIRMSEAHARMHLRQHVTQEDVDMAIRVLLESFISTQKFGVQKALQKSFRKYMTFKKDYNELLLYILRELVKNALHFEEIVTGSTSGLTSVDVKVDDLYNKAQEHDIYDLKPFFNSSQFTRANFVLDEETRVIRHRLV 931
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02937 931 MobiDBLite consensus disorder prediction 67 82 - -
Spst3g02937 931 Pfam MCM OB domain 316 443 IPR033762 -
Spst3g02937 931 Gene3D - 476 849 IPR027417 -
Spst3g02937 931 MobiDBLite consensus disorder prediction 709 732 - -
Spst3g02937 931 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 202 874 IPR031327 GO:0003677|GO:0005524|GO:0032508
Spst3g02937 931 SMART mcm 313 827 IPR031327 GO:0003677|GO:0005524|GO:0032508
Spst3g02937 931 Pfam MCM N-terminal domain 217 310 IPR027925 -
Spst3g02937 931 FunFam DNA helicase 476 849 - -
Spst3g02937 931 Pfam MCM P-loop domain 484 706 IPR001208 GO:0003677|GO:0005524|GO:0032508
Spst3g02937 931 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 460 471 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Spst3g02937 931 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 326 343 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Spst3g02937 931 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 349 361 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Spst3g02937 931 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 384 398 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Spst3g02937 931 PRINTS Mini-chromosome maintenance (MCM) protein 2 signature 445 456 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Spst3g02937 931 CDD MCM2 499 825 - -
Spst3g02937 931 MobiDBLite consensus disorder prediction 11 29 - -
Spst3g02937 931 MobiDBLite consensus disorder prediction 42 66 - -
Spst3g02937 931 FunFam DNA helicase 344 394 - -
Spst3g02937 931 Pfam Mini-chromosome maintenance protein 2 36 183 IPR008045 GO:0003677|GO:0005524|GO:0005634|GO:0006270|GO:0042555|GO:1905775
Spst3g02937 931 ProSiteProfiles MCM family domain profile. 496 702 IPR001208 GO:0003677|GO:0005524|GO:0032508
Spst3g02937 931 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 506 829 IPR027417 -
Spst3g02937 931 MobiDBLite consensus disorder prediction 127 152 - -
Spst3g02937 931 ProSitePatterns MCM family signature. 605 613 IPR018525 GO:0003677|GO:0005524|GO:0006260
Spst3g02937 931 Gene3D - 317 442 IPR012340 -
Spst3g02937 931 Gene3D - 344 394 - -
Spst3g02937 931 SUPERFAMILY Nucleic acid-binding proteins 218 465 IPR012340 -
Spst3g02937 931 Gene3D - 209 313 - -
Spst3g02937 931 PRINTS Mini-chromosome maintenance (MCM) protein family signature 625 638 IPR001208 GO:0003677|GO:0005524|GO:0032508
Spst3g02937 931 PRINTS Mini-chromosome maintenance (MCM) protein family signature 676 684 IPR001208 GO:0003677|GO:0005524|GO:0032508
Spst3g02937 931 PRINTS Mini-chromosome maintenance (MCM) protein family signature 537 552 IPR001208 GO:0003677|GO:0005524|GO:0032508
Spst3g02937 931 PRINTS Mini-chromosome maintenance (MCM) protein family signature 649 661 IPR001208 GO:0003677|GO:0005524|GO:0032508
Spst3g02937 931 PRINTS Mini-chromosome maintenance (MCM) protein family signature 597 611 IPR001208 GO:0003677|GO:0005524|GO:0032508
Spst3g02937 931 MobiDBLite consensus disorder prediction 1 94 - -
Spst3g02937 931 Pfam MCM AAA-lid domain 742 826 IPR041562 -
Spst3g02937 931 MobiDBLite consensus disorder prediction 108 191 - -
Spst3g02937 931 FunFam DNA helicase 209 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02937 Spst-Chr3 79030742 79035672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02937 20 927 Core DNA Replication Machinery Family AT1G44900 74.646 0.0 1358
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02937 K02540 - gmx:100799441 1714.51