Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02930 ATGGAGGAGAAGAGAGAGAAAGAGGCGAACTCAAAGTCATCATCCACCATGGCAAATTCTGTGGCATTTTCCGACGAGATTCCCAGCATGAACATGTCCATGAGCACCACCATGTCCTTCCCTTTTTCCCCTGCTTACTCCACCATCTTTGACATCATGCCACCACTTCCACCACCACCATCTTCATCCTCCTCTCACGATCCAAAAGCTCCAAACTTTCCCTTCTTGGACTTGCTGGGTGTCCCTGATTATACCCCTTCCTTATTCGACTGGCCCCAAATAACCGCCGACACTTCACCACTACCGCTACCACCCCCCGCCCAAATCACCCACGCGCTTCCGTCTCCGGCCAGCTCCAATGTCCCCGACGGAGGCTCCGAGGTCCTCAACACTCCGCCGTCTCCCAACTACTCGTCGATTTCCTCCTCGTCGAATGAGGCCGCCCTCGCCGCCGCCGCCGCCAACAAAGCAACGGGAAATGAAGATGAAGCGGAGGAGGATGAAACGACAACAGATGCAGCAGCAGGCAAAGGAGAAGACCAAGATCAAGACAAGTCTAAGAATCAGCTGAAGCCAAAAAAGAAGCACCAAAAGAAGCAAAGAGAGCCAAGATTTGCGTTCATGACAAAGAGTGAAGTGGATCACCTCGACGATGGCTATAGGTGGCGCAAGTACGGTCAGAAAGCCGTCAAAAACAGCCCTCATCCCAGGAGTTACTATCGTTGCACCACCGCGGCATGCGGCGTGAAGAAGCGCGTGGAGCGTTCCTCGGAGGACCCTACAGTGGTGGTGACAACCTACGAGGGGCAACACACGCACCCTTGTCCTGCCACCTCACGGGCTAGTCTCGGGTTCTTGCACTCCGAACCAAGTGGGTTCGGACCCACCAGTGGACTCTATATGCTGCCACAACAACACCAACAGTTTTGTCATGACCAAGCAGCAATGTTATACAACTCCTCTACCACCACCTCATCATCATCATCACCATCACCTCTGAATGTTGTTAACTCAGCTTCTTGTGGAATCAACTACGCCAATACGTCGTCGTTGGGTGGCTTCCTTCATAGCCAAGAGAATCAGCATGTTTTTACGGTGGGAGGTCCTCAGGGTTTGTTCAATGGGCTTCTTCAGGACATTGTGCCAACGCAGATGATGAACGAAGAGAGGGGAGATCGTGTGTAG 1185 0.5283 MEEKREKEANSKSSSTMANSVAFSDEIPSMNMSMSTTMSFPFSPAYSTIFDIMPPLPPPPSSSSSHDPKAPNFPFLDLLGVPDYTPSLFDWPQITADTSPLPLPPPAQITHALPSPASSNVPDGGSEVLNTPPSPNYSSISSSSNEAALAAAAANKATGNEDEAEEDETTTDAAAGKGEDQDQDKSKNQLKPKKKHQKKQREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPHPRSYYRCTTAACGVKKRVERSSEDPTVVVTTYEGQHTHPCPATSRASLGFLHSEPSGFGPTSGLYMLPQQHQQFCHDQAAMLYNSSTTTSSSSSPSPLNVVNSASCGINYANTSSLGGFLHSQENQHVFTVGGPQGLFNGLLQDIVPTQMMNEERGDRV 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02930 394 MobiDBLite consensus disorder prediction 1 21 - -
Spst3g02930 394 MobiDBLite consensus disorder prediction 170 189 - -
Spst3g02930 394 ProSiteProfiles WRKY domain profile. 211 276 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst3g02930 394 MobiDBLite consensus disorder prediction 53 72 - -
Spst3g02930 394 Pfam WRKY DNA -binding domain 217 274 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst3g02930 394 FunFam WRKY transcription factor 57 202 276 - -
Spst3g02930 394 Gene3D WRKY domain 200 277 IPR036576 GO:0003700|GO:0006355|GO:0043565
Spst3g02930 394 MobiDBLite consensus disorder prediction 112 149 - -
Spst3g02930 394 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 131 319 IPR044810 GO:0003700
Spst3g02930 394 SMART WRKY_cls 216 275 IPR003657 GO:0003700|GO:0006355|GO:0043565
Spst3g02930 394 MobiDBLite consensus disorder prediction 99 206 - -
Spst3g02930 394 SUPERFAMILY WRKY DNA-binding domain 208 276 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02930 Spst-Chr3 78931215 78933019 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02930 13 385 WRKY Transcription Factor Family AT5G49520 39.793 2.26e-54 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Spst3g02930 WRKY 2e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02930 - - gmx:100788697 453.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02930 3 78931215 78933019 Spst3g02930 3 78931215 78933019 ECH
Spst3g02930 3 78931215 78933019 Spst2g01703 2 15975540 15979804 PCT
Spst6g01525 6 14326953 14328851 Spst3g02930 3 78931215 78933019 PCT