Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst3g02929 ATGACCTACCACAACACCCGCCGGAGCCCTTCCGGCTTCCGCTCCGGCGCCGCCCCTCACCACCGTGCATTCGACAGTCCTCCGCGTCGCTCCCCCGGCAGGGGAGGAGGATTCCGGCCTATGGGCGGCGAGGGTCCTGGGGAATTCGGATTCAATGGTCACCAGCCACCGCCGCTGGCTGGCCAGAAACGAGGTTTTCCCGTCTCAGGACGCGGTAGCGGTTCACCTGATCGTTTAGAAGGAGGAAATTTTGCCAAACTTTTTGTCGGGTCTGTTCCCCGAACAGCCACTGAAGATGATATTCGCCCACTGTTTGAGGAACATGGGAATGTGATTGAGGTTGCTCTCATCAAAGATAGAAAGACAGGACAATATCAAGGAGCCACAACATGTAAACCTATAAGCTGCTCTTTGTATAGCAGATGGGATCTTGGAGGACCAAAAGATCCTGCTCTAGCAATTGTGGCTGCAGCTATGCTGGAGAAAAGCAGTTGTTGTTTCATAAAATATTCTACTGCAGAAGAAGCTGATCAGGCAATTAGAGCATTGCACAATCAACATACTCTTCCTGGAGGTGTCGGTCCAATCCAAGTGCGTTATGCTGATGGTGAACGGGAACGCCTCGGTGCAGTTGAATACAAATTATTCGTGGGCTCTCTGAACAAACAGGCTACCGTAAAGGAAGTTGAGGAAATTTTCTCAAAATATGGTCGGGTTGAAGATGTTTATCTTATGCGCGATGAGAAGAAACAAAGTCGTGGATGTGGTTTTGTCAAATACTCGCACAGAGATATGGCTCTGGCAGCTATTAGTGCACTTGATGGAATCTACACAATGAGAGGTTGTGAGCAACCACTAATTGTCCGGTTTGCTGATCCTAAAAGGCCTCGTCAAGGAGATTCCAGGTTTGTCCTTGCTGATAGATTAAAACAAGCATGGAACCACGGACTGTTGACATTTGACCTAGAAATTGACTTGTGCTATCTGCTGGGTCTTGCCTTTGGAGGTCCTGGATTTGGTCCTAGATTTGATGCACCAGGCTCAAGACTTCCATCCAACATTGCAGACCCAATGGGTGATCGAATGCCTCCCCCTAATGCTTGGCGACCAATTCATCCGCCAAATATGGGGCCATCCCCTAATGCTGCTCTTCATGGCATGGGGCCACCAATGCTTCCAAGATCTGGTGAAATGGCATTGCCTACAAATGCACTCTTTGCAGCCTACTGCGAAAAGCTTAGCCATTTAGATCATGAACGTACTCATCATGCAACACCTGGTTCTCATGAAAGTGTCTCCATTTGCAAGGACTTTGCAACCTCTCCTCTTTTTCCACTGTTGAACAAGGTTTTAAGAGACTGCAACCTTCTTAGTCACAGTCAAAGGCCTACGACCTCTGTCATGCTATTGTGTCGAGGCGGTCCTATGACTAGCTTGGGAGGGCCCATAGATGGTCGTTTTCAAGTTCAGTCCATGCCATCGATGCCACAACAGAATTTCAATCAACCCATGCCACAAATTCCACCACCCAATTCACAAATATCACCAGTGCAGAAACCTATTCAATCATCCCAGGAGTTGTACCCTCAAGCACCAGTTCCCTACCCACAAACATCTCTTAGGCAGCATGGCCAGCCAAATCTTCCTCTTTCTGCTGGTCCTCTTCCATCTCAGCAGATACATGGATTAAGTGGACAGTTTCCAACTTCTCAACCCCAAACTCAACAGAGTGCTTTGTCTGCTGCATTTCCTCAGACTCCCCTTGACACCAGCATGCAATCTAATACTGCATTAACTACAAATCAACAGCAAGTTCCTCCCTCTGTGCCACAACAGCCTCTTCAGCAATCCCCTTCTCCGTTAGCTCAGATGTTATCACAACAGACACAGACTTTGCAAGCAAGCTTTCATTCATCTCAGCAGGCCTTTTCCCAGCTTCAACAACAATTACAGATGATGCAACCTTCTAGTCAAGCATTAACATTGCAGCAAAATGCAGAAGCAACTAAAAAACAGTCTCAATGGGCTGGGACTGTAGCACAAACAGTGGCCAGCACTCATGCAACTGTACCTGCTACAGATGTGTCTTCATCCAAAATTGTTACTTCGGCCTTACCAGCAATAAACCATAACATGGCTTTTGCCAAATGTAATTGGACAGAACATATATCTCCCGAAGGCTTCAAGTATTACTATAATAGTGTCACTGGTGAAAGTCGGTGGGAGAAACCAGAGGAGTTGACGTTGTATGAACAGCAACAGCAAAGGGCATCTGTTCAGCAGTCTCAAACTCAGTCACAGCCGTCAGTACTACCGCCCCAGCAAATTCCACAGTTCCAACAGGTTCAGCCTCAAAGTCATCTCCAAGGACAAGTTCTCCACCAGCAACAAGTACAACAGCCTCCTTTGTCCTCTTCGTTCCAGGCATATGGCGCTGGCCCTCAAAATGTTCAGGGTGTTCCTTCAGCACAAGAATTGATGTGGAAAAATAAGCCTTCAGGTTCCCATCCTTTTCAGCTCACTTATTTATCCCCTCCCTTGATGCTCACACACACAGACACAGTAGAGGCCACCGCCTTCATTTTGATCCCATGTGACATGTAA 2604 0.4754 MTYHNTRRSPSGFRSGAAPHHRAFDSPPRRSPGRGGGFRPMGGEGPGEFGFNGHQPPPLAGQKRGFPVSGRGSGSPDRLEGGNFAKLFVGSVPRTATEDDIRPLFEEHGNVIEVALIKDRKTGQYQGATTCKPISCSLYSRWDLGGPKDPALAIVAAAMLEKSSCCFIKYSTAEEADQAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATVKEVEEIFSKYGRVEDVYLMRDEKKQSRGCGFVKYSHRDMALAAISALDGIYTMRGCEQPLIVRFADPKRPRQGDSRFVLADRLKQAWNHGLLTFDLEIDLCYLLGLAFGGPGFGPRFDAPGSRLPSNIADPMGDRMPPPNAWRPIHPPNMGPSPNAALHGMGPPMLPRSGEMALPTNALFAAYCEKLSHLDHERTHHATPGSHESVSICKDFATSPLFPLLNKVLRDCNLLSHSQRPTTSVMLLCRGGPMTSLGGPIDGRFQVQSMPSMPQQNFNQPMPQIPPPNSQISPVQKPIQSSQELYPQAPVPYPQTSLRQHGQPNLPLSAGPLPSQQIHGLSGQFPTSQPQTQQSALSAAFPQTPLDTSMQSNTALTTNQQQVPPSVPQQPLQQSPSPLAQMLSQQTQTLQASFHSSQQAFSQLQQQLQMMQPSSQALTLQQNAEATKKQSQWAGTVAQTVASTHATVPATDVSSSKIVTSALPAINHNMAFAKCNWTEHISPEGFKYYYNSVTGESRWEKPEELTLYEQQQQRASVQQSQTQSQPSVLPPQQIPQFQQVQPQSHLQGQVLHQQQVQQPPLSSSFQAYGAGPQNVQGVPSAQELMWKNKPSGSHPFQLTYLSPPLMLTHTDTVEATAFILIPCDM 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst3g02929 867 SUPERFAMILY RNA-binding domain, RBD 76 207 IPR035979 GO:0003676
Spst3g02929 867 CDD WW 716 746 IPR001202 GO:0005515
Spst3g02929 867 MobiDBLite consensus disorder prediction 753 772 - -
Spst3g02929 867 FunFam Flowering time control protein FCA 209 299 - -
Spst3g02929 867 MobiDBLite consensus disorder prediction 481 580 - -
Spst3g02929 867 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 215 282 IPR000504 GO:0003723
Spst3g02929 867 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 87 127 IPR000504 GO:0003723
Spst3g02929 867 SUPERFAMILY WW domain 718 751 IPR036020 GO:0005515
Spst3g02929 867 PANTHER RNA BINDING PROTEIN 55 655 - -
Spst3g02929 867 MobiDBLite consensus disorder prediction 599 620 - -
Spst3g02929 867 Gene3D - 714 763 - -
Spst3g02929 867 Gene3D - 209 301 IPR012677 -
Spst3g02929 867 SMART rrm1_1 86 199 IPR000504 GO:0003723
Spst3g02929 867 SMART rrm1_1 214 289 IPR000504 GO:0003723
Spst3g02929 867 ProSitePatterns WW/rsp5/WWP domain signature. 719 744 IPR001202 GO:0005515
Spst3g02929 867 MobiDBLite consensus disorder prediction 516 580 - -
Spst3g02929 867 SMART ww_5 714 746 IPR001202 GO:0005515
Spst3g02929 867 MobiDBLite consensus disorder prediction 1 80 - -
Spst3g02929 867 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 213 293 IPR000504 GO:0003723
Spst3g02929 867 Gene3D - 80 208 IPR012677 -
Spst3g02929 867 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 85 203 IPR000504 GO:0003723
Spst3g02929 867 ProSiteProfiles WW/rsp5/WWP domain profile. 719 746 IPR001202 GO:0005515
Spst3g02929 867 Pfam WW domain 718 744 IPR001202 GO:0005515
Spst3g02929 867 SUPERFAMILY RNA-binding domain, RBD 212 300 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst3g02929 Spst-Chr3 78915438 78925591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst3g02929 167 302 Eukaryotic Initiation Factors Gene Family AT1G71770 28.671 1.49e-07 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst3g02929 - - gmx:100798390 859.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst3g02929 3 78915438 78925591 Spst3g02929 3 78915438 78925591 ECH